Literature DB >> 9562552

Protein design: a perspective from simple tractable models

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Abstract

Recent progress in computational approaches to protein design builds on advances in statistical mechanical protein folding theory. Here, the number of sequences folding into a given conformation is evaluated and a simple condition for a protein model's designability is outlined.

Year:  1998        PMID： 9562552     DOI： 10.1016/S1359-0278(98)00021-2

Source DB:  PubMed          Journal:  Fold Des        ISSN： 1359-0278


  40 in total

Review 1.  Go-ing for the prediction of protein folding mechanisms.

Authors:  S Takada
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  Evolution of functionality in lattice proteins.

Authors:  P D Williams; D D Pollock; R A Goldstein
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

3.  Expanding protein universe and its origin from the biological Big Bang.

Authors:  Nikolay V Dokholyan; Boris Shakhnovich; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-16       Impact factor: 11.205

4.  Thoroughly sampling sequence space: large-scale protein design of structural ensembles.

Authors:  Stefan M Larson; Jeremy L England; John R Desjarlais; Vijay S Pande
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

5.  Natural selection of more designable folds: a mechanism for thermophilic adaptation.

Authors:  Jeremy L England; Boris E Shakhnovich; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-03       Impact factor: 11.205

6.  Protein evolution within a structural space.

Authors:  Eric J Deeds; Nikolay V Dokholyan; Eugene I Shakhnovich
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

7.  Stability and the evolvability of function in a model protein.

Authors:  Jesse D Bloom; Claus O Wilke; Frances H Arnold; Christoph Adami
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

8.  Imprint of evolution on protein structures.

Authors:  Guido Tiana; Boris E Shakhnovich; Nikolay V Dokholyan; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-17       Impact factor: 11.205

Review 9.  The interface of protein structure, protein biophysics, and molecular evolution.

Authors:  David A Liberles; Sarah A Teichmann; Ivet Bahar; Ugo Bastolla; Jesse Bloom; Erich Bornberg-Bauer; Lucy J Colwell; A P Jason de Koning; Nikolay V Dokholyan; Julian Echave; Arne Elofsson; Dietlind L Gerloff; Richard A Goldstein; Johan A Grahnen; Mark T Holder; Clemens Lakner; Nicholas Lartillot; Simon C Lovell; Gavin Naylor; Tina Perica; David D Pollock; Tal Pupko; Lynne Regan; Andrew Roger; Nimrod Rubinstein; Eugene Shakhnovich; Kimmen Sjölander; Shamil Sunyaev; Ashley I Teufel; Jeffrey L Thorne; Joseph W Thornton; Daniel M Weinreich; Simon Whelan
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

10.  Protein structure and evolutionary history determine sequence space topology.

Authors:  Boris E Shakhnovich; Eric Deeds; Charles Delisi; Eugene Shakhnovich
Journal:  Genome Res       Date:  2005-03       Impact factor: 9.043
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