Literature DB >> 9592144

Identification of a gene involved in the generation of 4-thiouridine in tRNA.

E G Mueller1, C J Buck, P M Palenchar, L E Barnhart, J L Paulson.   

Abstract

All organisms modify the bases of their RNA after transcription. Relatively little is known about the functions that these chemical alterations serve and, with very few exceptions, even less has been established regarding the enzymology involved. One modified base of known function is 4-thiouridine at position 8 of certain bacterial tRNAs, which serves as a photosensor for near-UV light. A gene involved in the conversion of uridine at position 8 into 4-thiouridine has been identified by genetic screening and its role in 4-thiouridine generation has been confirmed biochemically. This same gene, thiI , has recently been shown to play a role in thiamin biosynthesis. The purification and characteristics of the purified protein are also reported.

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Year:  1998        PMID: 9592144      PMCID: PMC147624          DOI: 10.1093/nar/26.11.2606

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Characterization of thiI, a new gene involved in thiazole biosynthesis in Salmonella typhimurium.

Authors:  E Webb; K Claas; D M Downs
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

2.  Enzymes producing 4-thiouridine in Escherichia coli tRNA: approximate chromosomal locations of the genes and enzyme activities in a 4-thiouridine-deficient mutant.

Authors:  M N Lipsett
Journal:  J Bacteriol       Date:  1978-09       Impact factor: 3.490

3.  Biosynthesis of pseudouridine in transfer ribonucleic acid.

Authors:  R Cortese; H O Kammen; S J Spengler; B N Ames
Journal:  J Biol Chem       Date:  1974-02-25       Impact factor: 5.157

4.  Biosynthesis of 4-thiouridylate. Participation of a sulfurtransferase containing pyridoxal 5'-phosphate.

Authors:  M N Lipsett
Journal:  J Biol Chem       Date:  1972-03-10       Impact factor: 5.157

5.  Photoreaction of 4-thiouracil with cytosine. Relation to photoreactions in Escherichia coli transfer ribonucleic acids.

Authors:  D E Bergstrom; N J Leonard
Journal:  Biochemistry       Date:  1972-01-04       Impact factor: 3.162

6.  Conformation and functioning of tRNAs: cross-linked tRNAs as substrate for tRNA nucleotidyl-transferase and aminoacyl synthetases.

Authors:  D S Carré; G Thomas; A Favre
Journal:  Biochimie       Date:  1974       Impact factor: 4.079

7.  Photochemistry of 4-thiouridine in Escherichia coli transfer RNA1Val.

Authors:  A Favre; A M Michelson; M Yaniv
Journal:  J Mol Biol       Date:  1971-05-28       Impact factor: 5.469

8.  The photochemistry of 4-thiouridine in Escherichia coli t-RNA Vał1.

Authors:  A Favre; M Yaniv; A M Michelson
Journal:  Biochem Biophys Res Commun       Date:  1969-10-08       Impact factor: 3.575

9.  Mechanism of growth delay induced in Escherichia coli by near ultraviolet radiation.

Authors:  T V Ramabhadran; J Jagger
Journal:  Proc Natl Acad Sci U S A       Date:  1976-01       Impact factor: 11.205

10.  Isolation of single-site Escherichia coli mutants deficient in thiamine and 4-thiouridine syntheses: identification of a nuvC mutant.

Authors:  J Ryals; R Y Hsu; M N Lipsett; H Bremer
Journal:  J Bacteriol       Date:  1982-08       Impact factor: 3.490

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  41 in total

1.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

2.  A method for prediction of the locations of linker regions within large multifunctional proteins, and application to a type I polyketide synthase.

Authors:  Daniel W Udwary; Matthew Merski; Craig A Townsend
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

3.  Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification.

Authors:  Wei Hu; Chengkun Wang; Jingdan Liang; Tianlong Zhang; Zhongpei Hu; Zhijun Wang; Wenxian Lan; Fang Li; Houming Wu; Jianping Ding; Geng Wu; Zixin Deng; Chunyang Cao
Journal:  Cell Res       Date:  2012-04-24       Impact factor: 25.617

Review 4.  Twenty years hunting for sulfur in DNA.

Authors:  Shi Chen; Lianrong Wang; Zixin Deng
Journal:  Protein Cell       Date:  2010-02-07       Impact factor: 14.870

5.  Functional Analysis of Bacillus subtilis Genes Involved in the Biosynthesis of 4-Thiouridine in tRNA.

Authors:  Lauren J Rajakovich; John Tomlinson; Patricia C Dos Santos
Journal:  J Bacteriol       Date:  2012-07-06       Impact factor: 3.490

6.  Using genomic information to investigate the function of ThiI, an enzyme shared between thiamin and 4-thiouridine biosynthesis.

Authors:  E G Mueller; P M Palenchar
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

7.  Purification, crystallization and preliminary crystallographic analysis of the putative thiamine-biosynthesis protein PH1313 from Pyrococcus horikoshii OT3.

Authors:  Michihiro Sugahara; Satoko Murai; Mitsuaki Sugahara; Naoki Kunishima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

8.  Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine.

Authors:  Christopher S Hamilton; Todd M Greco; Caroline A Vizthum; Joy M Ginter; Murray V Johnston; Eugene G Mueller
Journal:  Biochemistry       Date:  2006-10-03       Impact factor: 3.162

9.  Structural alterations of the cysteine desulfurase IscS of Salmonella enterica serovar Typhimurium reveal substrate specificity of IscS in tRNA thiolation.

Authors:  Hans K Lundgren; Glenn R Björk
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

10.  Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis.

Authors:  Yuchen Liu; Xiang Zhu; Akiyoshi Nakamura; Ron Orlando; Dieter Söll; William B Whitman
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

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