Literature DB >> 21203994

Twenty years hunting for sulfur in DNA.

Shi Chen1, Lianrong Wang, Zixin Deng.   

Abstract

Here we tell a 20-year long story. It began with an easily overlooked DNA degradation (Dnd) phenomenon during electrophoresis and eventually led to the discovery of an unprecedented DNA sulfur modification governed by five dnd genes. This unusual DNA modification, called phosphorothioation, is the first physiological modification identified on the DNA backbone, in which the nonbridging oxygen is replaced by sulfur in a sequence selective and stereo-specific manner. Homologous dnd gene clusters have been identified in diverse and distantly related bacteria and thus have drawn immediate attention of the entire microbial scientific community. Here, we summarize the progress in chemical, genetic, enzymatic, bioinformatical and analytical aspects of this novel postreplicative DNA modification. We also discuss perspectives on the physiological functions of the DNA phosphorothioate modification in bacteria and their implications.

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Year:  2010        PMID: 21203994      PMCID: PMC4875114          DOI: 10.1007/s13238-010-0009-y

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  38 in total

1.  Diastereomers of 5'-O-adenosyl 3'-O-uridyl phosphorothioate: chemical synthesis and enzymatic properties.

Authors:  P M Burgers; F Eckstein
Journal:  Biochemistry       Date:  1979-02-20       Impact factor: 3.162

Review 2.  Nucleoside phosphorothioates.

Authors:  F Eckstein
Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

3.  Identification of a gene involved in the generation of 4-thiouridine in tRNA.

Authors:  E G Mueller; C J Buck; P M Palenchar; L E Barnhart; J L Paulson
Journal:  Nucleic Acids Res       Date:  1998-06-01       Impact factor: 16.971

4.  Streptomyces lividans 66 contains a gene for phage resistance which is similar to the phage lambda ea59 endonuclease gene.

Authors:  X Zhou; Z Deng; D A Hopwood; T Kieser
Journal:  Mol Microbiol       Date:  1994-06       Impact factor: 3.501

5.  High-efficiency oligonucleotide-directed plasmid mutagenesis.

Authors:  D B Olsen; F Eckstein
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

6.  Pulsed-field gel electrophoresis study of Mycobacterium abscessus isolates previously affected by DNA degradation.

Authors:  Yansheng Zhang; Mitchell A Yakrus; Edward A Graviss; Natalie Williams-Bouyer; Christine Turenne; Amin Kabani; Richard J Wallace
Journal:  J Clin Microbiol       Date:  2004-12       Impact factor: 5.948

7.  Functional analysis of spfD gene involved in DNA phosphorothioation in Pseudomonas fluorescens Pf0-1.

Authors:  Fen Yao; Tiegang Xu; Xiufen Zhou; Zixin Deng; Delin You
Journal:  FEBS Lett       Date:  2009-01-24       Impact factor: 4.124

8.  Stereochemical course of DNA hydrolysis by nuclease S1.

Authors:  B V Potter; P J Romaniuk; F Eckstein
Journal:  J Biol Chem       Date:  1983-02-10       Impact factor: 5.157

9.  Phosphorothioate analogs of oligodeoxynucleotides: inhibitors of replication and cytopathic effects of human immunodeficiency virus.

Authors:  M Matsukura; K Shinozuka; G Zon; H Mitsuya; M Reitz; J S Cohen; S Broder
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

10.  DNA phosphorothioation in Streptomyces lividans: mutational analysis of the dnd locus.

Authors:  Tiegang Xu; Jingdan Liang; Shi Chen; Lianrong Wang; Xinyi He; Delin You; Zhijun Wang; Aiying Li; Zhongli Xu; Xiufen Zhou; Zixin Deng
Journal:  BMC Microbiol       Date:  2009-02-20       Impact factor: 3.605

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  8 in total

1.  Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics.

Authors:  Dapeng Zhang; Robson F de Souza; Vivek Anantharaman; Lakshminarayan M Iyer; L Aravind
Journal:  Biol Direct       Date:  2012-06-25       Impact factor: 4.540

2.  ICBS 2017 in Shanghai-Illuminating Life with Chemical Innovation.

Authors:  Qi Zhang; Jingyu Zhang; Evripidis Gavathiotis
Journal:  ACS Chem Biol       Date:  2018-05-02       Impact factor: 5.100

3.  In vivo mutational characterization of DndE involved in DNA phosphorothioate modification.

Authors:  Chongde Lai; Xiaolin Wu; Chao Chen; Teng Huang; Xiaolin Xiong; Shuangju Wu; Meijia Gu; Zixin Deng; Xi Chen; Shi Chen; Lianrong Wang
Journal:  PLoS One       Date:  2014-09-30       Impact factor: 3.240

4.  DNA phosphorothioate modifications influence the global transcriptional response and protect DNA from double-stranded breaks.

Authors:  Rui Gan; Xiaolin Wu; Wei He; Zhenhua Liu; Shuangju Wu; Chao Chen; Si Chen; Qianrong Xiang; Zixin Deng; Dequan Liang; Shi Chen; Lianrong Wang
Journal:  Sci Rep       Date:  2014-10-16       Impact factor: 4.379

5.  The origin and impeded dissemination of the DNA phosphorothioation system in prokaryotes.

Authors:  Huahua Jian; Guanpeng Xu; Yi Yi; Yali Hao; Yinzhao Wang; Lei Xiong; Siyuan Wang; Shunzhang Liu; Canxing Meng; Jiahua Wang; Yue Zhang; Chao Chen; Xiaoyuan Feng; Haiwei Luo; Hao Zhang; Xingguo Zhang; Lianrong Wang; Zhijun Wang; Zixin Deng; Xiang Xiao
Journal:  Nat Commun       Date:  2021-11-04       Impact factor: 14.919

6.  Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA.

Authors:  Lakshminarayan M Iyer; Dapeng Zhang; A Maxwell Burroughs; L Aravind
Journal:  Nucleic Acids Res       Date:  2013-06-28       Impact factor: 16.971

Review 7.  Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification.

Authors:  Lakshminarayan M Iyer; Dapeng Zhang; L Aravind
Journal:  Bioessays       Date:  2015-12-12       Impact factor: 4.345

8.  Kinetic Basis of the Bifunctionality of SsoII DNA Methyltransferase.

Authors:  Nadezhda A Timofeyeva; Alexandra Yu Ryazanova; Maxim V Norkin; Tatiana S Oretskaya; Olga S Fedorova; Elena A Kubareva
Journal:  Molecules       Date:  2018-05-16       Impact factor: 4.411

  8 in total

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