Literature DB >> 22525332

Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification.

Wei Hu, Chengkun Wang, Jingdan Liang, Tianlong Zhang, Zhongpei Hu, Zhijun Wang, Wenxian Lan, Fang Li, Houming Wu, Jianping Ding, Geng Wu, Zixin Deng, Chunyang Cao.   

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Year:  2012        PMID： 22525332      PMCID： PMC3391021          DOI： 10.1038/cr.2012.66

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


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  16 in total

1.  Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.

Authors:  Yasukazu Nakamura; Takakazu Kaneko; Shusei Sato; Masahiko Ikeuchi; Hiroshi Katoh; Shigemi Sasamoto; Akiko Watanabe; Mayumi Iriguchi; Kumiko Kawashima; Takaharu Kimura; Yoshie Kishida; Chiaki Kiyokawa; Mitsuyo Kohara; Midori Matsumoto; Ai Matsuno; Naomi Nakazaki; Sayaka Shimpo; Masako Sugimoto; Chie Takeuchi; Manabu Yamada; Satoshi Tabata
Journal:  DNA Res       Date:  2002-08-31       Impact factor: 4.458

2.  DNA phosphorothioation is widespread and quantized in bacterial genomes.

Authors:  Lianrong Wang; Shi Chen; Kevin L Vergin; Stephen J Giovannoni; Simon W Chan; Michael S DeMott; Koli Taghizadeh; Otto X Cordero; Michael Cutler; Sonia Timberlake; Eric J Alm; Martin F Polz; Jarone Pinhassi; Zixin Deng; Peter C Dedon
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-01       Impact factor: 11.205

3.  Conserved structural motifs in the sulfotransferase family.

Authors:  Y Kakuta; L G Pedersen; L C Pedersen; M Negishi
Journal:  Trends Biochem Sci       Date:  1998-04       Impact factor: 13.807

4.  Identification of a gene involved in the generation of 4-thiouridine in tRNA.

Authors:  E G Mueller; C J Buck; P M Palenchar; L E Barnhart; J L Paulson
Journal:  Nucleic Acids Res       Date:  1998-06-01       Impact factor: 16.971

5.  Novel post-replicative DNA modification in Streptomyces: analysis of the preferred modification site of plasmid pIJ101.

Authors:  P Dyson; M Evans
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

6.  Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: a member of the ATP grasp protein superfamily.

Authors:  J B Thoden; T J Kappock; J Stubbe; H M Holden
Journal:  Biochemistry       Date:  1999-11-23       Impact factor: 3.162

7.  A novel DNA modification by sulphur.

Authors:  Xiufen Zhou; Xinyi He; Jingdan Liang; Aiying Li; Tiegang Xu; Tobias Kieser; John D Helmann; Zixin Deng
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

8.  A novel DNA modification by sulfur: DndA is a NifS-like cysteine desulfurase capable of assembling DndC as an iron-sulfur cluster protein in Streptomyces lividans.

Authors:  Delin You; Lianrong Wang; Fen Yao; Xiufen Zhou; Zixin Deng
Journal:  Biochemistry       Date:  2007-05-01       Impact factor: 3.162

9.  Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron.

Authors:  X Zhou; Z Deng; J L Firmin; D A Hopwood; T Kieser
Journal:  Nucleic Acids Res       Date:  1988-05-25       Impact factor: 16.971

Review 10.  Phosphorothioates in molecular biology.

Authors:  F Eckstein; G Gish
Journal:  Trends Biochem Sci       Date:  1989-03       Impact factor: 13.807
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  21 in total

1.  Convergence of DNA methylation and phosphorothioation epigenetics in bacterial genomes.

Authors:  Chao Chen; Lianrong Wang; Si Chen; Xiaolin Wu; Meijia Gu; Xi Chen; Susu Jiang; Yunfu Wang; Zixin Deng; Peter C Dedon; Shi Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-11       Impact factor: 11.205

2.  Pathological phenotypes and in vivo DNA cleavage by unrestrained activity of a phosphorothioate-based restriction system in Salmonella.

Authors:  Bo Cao; Qiuxiang Cheng; Chen Gu; Fen Yao; Michael S DeMott; Xiaoqing Zheng; Zixin Deng; Peter C Dedon; Delin You
Journal:  Mol Microbiol       Date:  2014-07-23       Impact factor: 3.501

3.  Occurrence, evolution, and functions of DNA phosphorothioate epigenetics in bacteria.

Authors:  Tong Tong; Si Chen; Lianrong Wang; You Tang; Jae Yong Ryu; Susu Jiang; Xiaolin Wu; Chao Chen; Jie Luo; Zixin Deng; Zhiqiang Li; Sang Yup Lee; Shi Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

Review 4.  Evolutionary Genomics of Defense Systems in Archaea and Bacteria.

Authors:  Eugene V Koonin; Kira S Makarova; Yuri I Wolf
Journal:  Annu Rev Microbiol       Date:  2017-06-28       Impact factor: 15.500

5.  Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences.

Authors:  Bo Cao; Chao Chen; Michael S DeMott; Qiuxiang Cheng; Tyson A Clark; Xiaolin Xiong; Xiaoqing Zheng; Vincent Butty; Stuart S Levine; George Yuan; Matthew Boitano; Khai Luong; Yi Song; Xiufen Zhou; Zixin Deng; Stephen W Turner; Jonas Korlach; Delin You; Lianrong Wang; Shi Chen; Peter C Dedon
Journal:  Nat Commun       Date:  2014-06-05       Impact factor: 14.919

6.  DndEi Exhibits Helicase Activity Essential for DNA Phosphorothioate Modification and ATPase Activity Strongly Stimulated by DNA Substrate with a GAAC/GTTC Motif.

Authors:  Tao Zheng; Pan Jiang; Bo Cao; Qiuxiang Cheng; Lingxin Kong; Xiaoqing Zheng; Qinghai Hu; Delin You
Journal:  J Biol Chem       Date:  2015-12-02       Impact factor: 5.157

7.  Structural and Functional Analysis of DndE Involved in DNA Phosphorothioation in the Haloalkaliphilic Archaea Natronorubrum bangense JCM10635.

Authors:  Wei He; Haiyan Gao; Dan Wu; Susu Jiang; Wanqiu Huang; Chao Chen; Zixin Deng; Lei Xiong; Geng Wu; Lianrong Wang
Journal:  mBio       Date:  2022-04-14       Impact factor: 7.786

8.  Involvement of the DNA Phosphorothioation System in TorR Binding and Anaerobic TMAO Respiration in Salmonella enterica.

Authors:  You Tang; Yue Hong; Li Liu; Xuan Du; Yaqi Ren; Susu Jiang; Wanjing Liu; Chen Chao; Zixin Deng; Lianrong Wang; Shi Chen
Journal:  mBio       Date:  2022-04-14       Impact factor: 7.786

9.  Regulation of DNA phosphorothioate modification in Salmonella enterica by DndB.

Authors:  Wei He; Teng Huang; You Tang; Yanhua Liu; Xiaolin Wu; Si Chen; Wan Chan; Yajie Wang; Xiaoyun Liu; Shi Chen; Lianrong Wang
Journal:  Sci Rep       Date:  2015-07-20       Impact factor: 4.379

10.  In vitro analysis of phosphorothioate modification of DNA reveals substrate recognition by a multiprotein complex.

Authors:  Bo Cao; Xiaoqing Zheng; Qiuxiang Cheng; Fen Yao; Tao Zheng; I Ramesh Babu; Huchen Zhou; Peter Dedon; Delin You
Journal:  Sci Rep       Date:  2015-07-27       Impact factor: 4.379
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