Literature DB >> 9591695

A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.

M C Shastry1, S D Luck, H Roder.   

Abstract

A continuous-flow capillary mixing apparatus, based on the original design of Regenfuss et al. (Regenfuss, P., R. M. Clegg, M. J. Fulwyler, F. J. Barrantes, and T. M. Jovin. 1985. Rev. Sci. Instrum. 56:283-290), has been developed with significant advances in mixer design, detection method and data analysis. To overcome the problems associated with the free-flowing jet used for observation in the original design (instability, optical artifacts due to scattering, poor definition of the geometry), the solution emerging from the capillary is injected directly into a flow-cell joined to the tip of the outer capillary via a ground-glass joint. The reaction kinetics are followed by measuring fluorescence versus distance downstream from the mixer, using an Hg(Xe) arc lamp for excitation and a digital camera with a UV-sensitized CCD detector for detection. Test reactions involving fluorescent dyes indicate that mixing is completed within 15 micros of its initiation and that the dead time of the measurement is 45 +/- 5 micros, which represents a >30-fold improvement in time resolution over conventional stopped-flow instruments. The high sensitivity and linearity of the CCD camera have been instrumental in obtaining artifact-free kinetic data over the time window from approximately 45 micros to a few milliseconds with signal-to-noise levels comparable to those of conventional methods. The scope of the method is discussed and illustrated with an example of a protein folding reaction.

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Year:  1998        PMID: 9591695      PMCID: PMC1299611          DOI: 10.1016/S0006-3495(98)77977-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

1.  An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core.

Authors:  S H Park; K T O'Neil; H Roder
Journal:  Biochemistry       Date:  1997-11-25       Impact factor: 3.162

2.  Submillisecond protein folding kinetics studied by ultrarapid mixing.

Authors:  C K Chan; Y Hu; S Takahashi; D L Rousseau; W A Eaton; J Hofrichter
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

Review 3.  Kinetic role of early intermediates in protein folding.

Authors:  H Roder; W Colón
Journal:  Curr Opin Struct Biol       Date:  1997-02       Impact factor: 6.809

4.  Rapid formation of secondary structure framework in protein folding studied by stopped-flow circular dichroism.

Authors:  K Kuwajima; H Yamaya; S Miwa; S Sugai; T Nagamura
Journal:  FEBS Lett       Date:  1987-08-31       Impact factor: 4.124

5.  Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

Authors:  H Roder; G A Elöve; S W Englander
Journal:  Nature       Date:  1988-10-20       Impact factor: 49.962

6.  Manipulation of the observed kinetic phases in the refolding of denatured ferricytochromes c.

Authors:  D N Brems; E Stellwagen
Journal:  J Biol Chem       Date:  1983-03-25       Impact factor: 5.157

7.  Molecular collapse: the rate-limiting step in two-state cytochrome c folding.

Authors:  T R Sosnick; L Mayne; S W Englander
Journal:  Proteins       Date:  1996-04

8.  Folding of cytochrome c initiated by submillisecond mixing.

Authors:  S Takahashi; S R Yeh; T K Das; C K Chan; D S Gottfried; D L Rousseau
Journal:  Nat Struct Biol       Date:  1997-01

9.  Kinetic mechanism of folding and unfolding of Rhodobacter capsulatus cytochrome c2.

Authors:  J M Sauder; N E MacKenzie; H Roder
Journal:  Biochemistry       Date:  1996-12-24       Impact factor: 3.162

10.  Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding.

Authors:  W Colón; G A Elöve; L P Wakem; F Sherman; H Roder
Journal:  Biochemistry       Date:  1996-04-30       Impact factor: 3.162

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  50 in total

1.  Cytochrome c folds through a smooth funnel.

Authors:  M Panda; M G Benavides-Garcia; M M Pierce; B T Nall
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

2.  Variable velocity liquid flow EPR applied to submillisecond protein folding.

Authors:  V M Grigoryants; A V Veselov; C P Scholes
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

3.  Ultrafast folding of WW domains without structured aromatic clusters in the denatured state.

Authors:  N Ferguson; C M Johnson; M Macias; H Oschkinat; A Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

4.  Analysis of multiple folding routes of proteins by a coarse-grained dynamics model.

Authors:  B Erman
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

5.  Measurement of microsecond dynamic motion in the intestinal fatty acid binding protein by using fluorescence correlation spectroscopy.

Authors:  Krishnananda Chattopadhyay; Saveez Saffarian; Elliot L Elson; Carl Frieden
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

6.  Laminar-flow fluid mixer for fast fluorescence kinetics studies.

Authors:  Suzette A Pabit; Stephen J Hagen
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

7.  Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein.

Authors:  Yongjin Zhu; Darwin O V Alonso; Kosuke Maki; Cheng-Yen Huang; Steven J Lahr; Valerie Daggett; Heinrich Roder; William F DeGrado; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

8.  Stepwise helix formation and chain compaction during protein folding.

Authors:  Heinrich Roder
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-09       Impact factor: 11.205

9.  Molecular dynamics simulation of protein folding by essential dynamics sampling: folding landscape of horse heart cytochrome c.

Authors:  Isabella Daidone; Andrea Amadei; Danilo Roccatano; Alfredo Di Nola
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

10.  Measuring the refolding of beta-sheets with different turn sequences on a nanosecond time scale.

Authors:  Rita P-Y Chen; Joseph J-T Huang; Hsin-Liang Chen; Howard Jan; Marappan Velusamy; Chung-Tien Lee; Wunshain Fann; Randy W Larsen; Sunney I Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

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