Literature DB >> 10777766

Variable velocity liquid flow EPR applied to submillisecond protein folding.

V M Grigoryants1, A V Veselov, C P Scholes.   

Abstract

We have developed a variable velocity, rapid-mix, continuous-flow method for observing and delineating kinetics by dielectric resonator-based electron paramagnetic resonance (EPR). The technology opens a new facet for kinetic study of radicals in liquid at submillisecond time resolution. The EPR system (after Sienkiewicz, A., K. Qu, and C. P. Scholes. 1994. Rev. Sci. Instrum. 65:68-74) accommodated a miniature quartz capillary mixer with an approximately 0.5 microliter delivery volume to the midpoint of the EPR-active zone. The flow velocity was varied in a preprogrammed manner, giving a minimum delivery time of approximately 150 microseconds. The mixing was efficient, and we constructed kinetics in the 0.15-2. 1-ms time range by plotting the continuous wave EPR signal taken during flow versus the reciprocal of flow velocity. We followed the refolding kinetics of iso-1-cytochrome c spin-labeled at Cysteine 102. At 20 degrees C, upon dilution of guanidinium hydrochloride denaturant, a fast phase of refolding was resolved with an exponential time constant of 0.12 ms, which was consistent with the "burst" phase observed by optically detected flow techniques. At 7 degrees C the kinetic refolding time of this phase increased to 0.5 ms.

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Year:  2000        PMID: 10777766      PMCID: PMC1300859          DOI: 10.1016/S0006-3495(00)76814-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy.

Authors:  G A Elöve; A F Chaffotte; H Roder; M E Goldberg
Journal:  Biochemistry       Date:  1992-08-04       Impact factor: 3.162

2.  Dielectric resonator-based flow and stopped-flow EPR with rapid field scanning: A methodology for increasing kinetic information.

Authors:  A Sienkiewicz; A M da Costa Ferreira; B Danner; C P Scholes
Journal:  J Magn Reson       Date:  1999-02       Impact factor: 2.229

3.  Evidence for barrier-limited protein folding kinetics on the microsecond time scale.

Authors:  M C Shastry; H Roder
Journal:  Nat Struct Biol       Date:  1998-05

4.  A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.

Authors:  M C Shastry; S D Luck; H Roder
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

5.  Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

Authors:  H Roder; G A Elöve; S W Englander
Journal:  Nature       Date:  1988-10-20       Impact factor: 49.962

6.  Ligand exchange during unfolding of cytochrome c.

Authors:  S R Yeh; D L Rousseau
Journal:  J Biol Chem       Date:  1999-06-18       Impact factor: 5.157

7.  Motion of spin-labeled side chains in T4 lysozyme. Correlation with protein structure and dynamics.

Authors:  H S Mchaourab; M A Lietzow; K Hideg; W L Hubbell
Journal:  Biochemistry       Date:  1996-06-18       Impact factor: 3.162

8.  Folding intermediates in cytochrome c.

Authors:  S R Yeh; D L Rousseau
Journal:  Nat Struct Biol       Date:  1998-03

9.  Microsecond generation of oxygen-bound cytochrome c oxidase by rapid solution mixing.

Authors:  S Takahashi; Y C Ching; J Wang; D L Rousseau
Journal:  J Biol Chem       Date:  1995-04-14       Impact factor: 5.157

10.  Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding.

Authors:  W Colón; G A Elöve; L P Wakem; F Sherman; H Roder
Journal:  Biochemistry       Date:  1996-04-30       Impact factor: 3.162

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  6 in total

Review 1.  Early events in protein folding explored by rapid mixing methods.

Authors:  Heinrich Roder; Kosuke Maki; Hong Cheng
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

2.  Rotational dynamics of HIV-1 nucleocapsid protein NCp7 as probed by a spin label attached by peptide synthesis.

Authors:  Zhiwen Zhang; Xiangmei Xi; Charles P Scholes; Christine B Karim
Journal:  Biopolymers       Date:  2008-12       Impact factor: 2.505

3.  Effect of freezing conditions on distances and their distributions derived from Double Electron Electron Resonance (DEER): a study of doubly-spin-labeled T4 lysozyme.

Authors:  Elka R Georgieva; Aritro S Roy; Vladimir M Grigoryants; Petr P Borbat; Keith A Earle; Charles P Scholes; Jack H Freed
Journal:  J Magn Reson       Date:  2012-01-24       Impact factor: 2.229

4.  Folding kinetics of staphylococcal nuclease studied by tryptophan engineering and rapid mixing methods.

Authors:  Kosuke Maki; Hong Cheng; Dimitry A Dolgikh; Heinrich Roder
Journal:  J Mol Biol       Date:  2007-02-09       Impact factor: 5.469

5.  The internal dynamics of mini c TAR DNA probed by electron paramagnetic resonance of nitroxide spin-labels at the lower stem, the loop, and the bulge.

Authors:  Yan Sun; Ziwei Zhang; Vladimir M Grigoryants; William K Myers; Fei Liu; Keith A Earle; Jack H Freed; Charles P Scholes
Journal:  Biochemistry       Date:  2012-10-18       Impact factor: 3.162

6.  Prion domain of yeast Ure2 protein adopts a completely disordered structure: a solid-support EPR study.

Authors:  Sam Ngo; Vicky Chiang; Elaine Ho; Linh Le; Zhefeng Guo
Journal:  PLoS One       Date:  2012-10-16       Impact factor: 3.240

  6 in total

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