Literature DB >> 12414719

Laminar-flow fluid mixer for fast fluorescence kinetics studies.

Suzette A Pabit1, Stephen J Hagen.   

Abstract

The ability to mix aqueous liquids on microsecond time scales, while consuming minimal amounts of sample and maintaining UV-visible optical access to the mixing region, is highly desirable for a range of biophysical studies of fast protein and nucleic acid interactions and folding. We have constructed a laminar coaxial jet mixer that allows the measurement of UV-excited fluorescence from nanoliter and microliter quantities of material, mixed at microsecond rates. The mixer injects a narrow cylindrical stream (radius a < 1 microm) of fluorescent sample into a larger flow of diluting buffer that moves through a capillary (100 microm i.d.) at a speed approximately 20 cm/s, under laminar flow conditions (Re approximately equal to 14). Construction from a fused silica capillary allows the laser excitation (at 266 nm) and detection (at 350 nm) of tryptophan fluorescence at reasonably low working concentrations, without interference from background fluorescence. Using this mixer we have measured sub-millisecond fluorescence quenching kinetics while consuming fluorescent sample at rates no greater than 6 nl/s. Consumption of the diluting buffer is also very modest (approximately 1-3 microl/s) in comparison with other rapid mixer designs.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12414719      PMCID: PMC1302371          DOI: 10.1016/S0006-3495(02)75296-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

Review 1.  Methods for exploring early events in protein folding.

Authors:  H Roder; M R Shastry
Journal:  Curr Opin Struct Biol       Date:  1999-10       Impact factor: 6.809

Review 2.  Fast kinetics and mechanisms in protein folding.

Authors:  W A Eaton; V Muñoz; S J Hagen; G S Jas; L J Lapidus; E R Henry; J Hofrichter
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

3.  Rapid compaction during RNA folding.

Authors:  Rick Russell; Ian S Millett; Mark W Tate; Lisa W Kwok; Bradley Nakatani; Sol M Gruner; Simon G J Mochrie; Vijay Pande; Sebastian Doniach; Daniel Herschlag; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

4.  A coaxial jet mixer for rapid kinetic analysis in flow injection and flow injection cytometry.

Authors:  L D Scampavia; G Blankenstein; J Ruzicka; G D Christian
Journal:  Anal Chem       Date:  1995-09-01       Impact factor: 6.986

5.  Biotechnology at low Reynolds numbers.

Authors:  J P Brody; P Yager; R E Goldstein; R H Austin
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

6.  Submillisecond protein folding kinetics studied by ultrarapid mixing.

Authors:  C K Chan; Y Hu; S Takahashi; D L Rousseau; W A Eaton; J Hofrichter
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

7.  Measurement of the dead time of a fluorescence stopped-flow instrument.

Authors:  B F Peterman
Journal:  Anal Biochem       Date:  1979-03       Impact factor: 3.365

8.  Solute perturbation of protein fluorescence. The quenching of the tryptophyl fluorescence of model compounds and of lysozyme by iodide ion.

Authors:  S S Lehrer
Journal:  Biochemistry       Date:  1971-08-17       Impact factor: 3.162

9.  Multicapillary mixer of solutions.

Authors:  G W Moskowitz; R L Bowman
Journal:  Science       Date:  1966-07-22       Impact factor: 47.728

10.  Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

Authors:  Shuji Akiyama; Satoshi Takahashi; Tetsunari Kimura; Koichiro Ishimori; Isao Morishima; Yukihiro Nishikawa; Tetsuro Fujisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

View more
  15 in total

1.  Femtomole mixer for microsecond kinetic studies of protein folding.

Authors:  David E Hertzog; Xavier Michalet; Marcus Jäger; Xiangxu Kong; Juan G Santiago; Shimon Weiss; Olgica Bakajin
Journal:  Anal Chem       Date:  2004-12-15       Impact factor: 6.986

Review 2.  Single-molecule fluorescence studies of protein folding and conformational dynamics.

Authors:  Xavier Michalet; Shimon Weiss; Marcus Jäger
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

Review 3.  Early events in protein folding explored by rapid mixing methods.

Authors:  Heinrich Roder; Kosuke Maki; Hong Cheng
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

4.  Three-dimensional continuous particle focusing in a microfluidic channel via standing surface acoustic waves (SSAW).

Authors:  Jinjie Shi; Shahrzad Yazdi; Sz-Chin Steven Lin; Xiaoyun Ding; I-Kao Chiang; Kendra Sharp; Tony Jun Huang
Journal:  Lab Chip       Date:  2011-06-27       Impact factor: 6.799

5.  The filament forming reactions of vimentin tetramers studied in a serial-inlet microflow device by small angle x-ray scattering.

Authors:  Oliva Saldanha; Martha E Brennich; Manfred Burghammer; Harald Herrmann; Sarah Köster
Journal:  Biomicrofluidics       Date:  2016-03-16       Impact factor: 2.800

6.  Advances in turbulent mixing techniques to study microsecond protein folding reactions.

Authors:  Sagar V Kathuria; Alexander Chan; Rita Graceffa; R Paul Nobrega; C Robert Matthews; Thomas C Irving; Blair Perot; Osman Bilsel
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

7.  Nonequilibrium single molecule protein folding in a coaxial mixer.

Authors:  Kambiz M Hamadani; Shimon Weiss
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

8.  Development of a technique for the investigation of folding dynamics of single proteins for extended time periods.

Authors:  Masahito Kinoshita; Kiyoto Kamagata; Akio Maeda; Yuji Goto; Tamiki Komatsuzaki; Satoshi Takahashi
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-11       Impact factor: 11.205

9.  Raman spectra of interchanging β-lactamase inhibitor intermediates on the millisecond time scale.

Authors:  Hossein Heidari Torkabadi; Tao Che; Jingjing Shou; Sivaprakash Shanmugam; Michael W Crowder; Robert A Bonomo; Marianne Pusztai-Carey; Paul R Carey
Journal:  J Am Chem Soc       Date:  2013-02-18       Impact factor: 15.419

10.  A simple three-dimensional-focusing, continuous-flow mixer for the study of fast protein dynamics.

Authors:  Kelly S Burke; Dzmitry Parul; Michael J Reddish; R Brian Dyer
Journal:  Lab Chip       Date:  2013-08-07       Impact factor: 6.799

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.