Literature DB >> 15123838

Measuring the refolding of beta-sheets with different turn sequences on a nanosecond time scale.

Rita P-Y Chen1, Joseph J-T Huang, Hsin-Liang Chen, Howard Jan, Marappan Velusamy, Chung-Tien Lee, Wunshain Fann, Randy W Larsen, Sunney I Chan.   

Abstract

Whether turns play an active or passive role in protein folding remains a controversial issue at this juncture. Here we use a photolabile cage strategy in combination with laser-flash photolysis and photoacoustic calorimetry to study the effects of different turns on the kinetics of beta-hairpin refolding on a nanosecond time scale. This strategy opens up a temporal window to allow the observation of early kinetic events in the protein refolding process at ambient temperature and pH without interference from any denaturants. Our results provide direct evidence demonstrating that even a one-residue difference in the turn region can change the refolding kinetics of a peptide. This observation suggests an active role for turn formation in directing protein folding.

Mesh:

Year:  2004        PMID: 15123838      PMCID: PMC409914          DOI: 10.1073/pnas.0304922101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  The turn sequence directs beta-strand alignment in designed beta-hairpins.

Authors:  E de Alba; M Rico; M A Jiménez
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

2.  Turn scanning by site-directed mutagenesis: application to the protein folding problem using the intestinal fatty acid binding protein.

Authors:  K Kim; C Frieden
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

3.  Critical role of beta-hairpin formation in protein G folding.

Authors:  E L McCallister; E Alm; D Baker
Journal:  Nat Struct Biol       Date:  2000-08

4.  Evidence for barrier-limited protein folding kinetics on the microsecond time scale.

Authors:  M C Shastry; H Roder
Journal:  Nat Struct Biol       Date:  1998-05

5.  A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.

Authors:  M C Shastry; S D Luck; H Roder
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

6.  A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native beta-hairpin.

Authors:  M S Searle; D H Williams; L C Packman
Journal:  Nat Struct Biol       Date:  1995-11

7.  Folding of protein G B1 domain studied by the conformational characterization of fragments comprising its secondary structure elements.

Authors:  F J Blanco; L Serrano
Journal:  Eur J Biochem       Date:  1995-06-01

8.  In vitro evolution of thermodynamically stable turns.

Authors:  H X Zhou; R H Hoess; W F DeGrado
Journal:  Nat Struct Biol       Date:  1996-05

9.  Folding dynamics and mechanism of beta-hairpin formation.

Authors:  V Muñoz; P A Thompson; J Hofrichter; W A Eaton
Journal:  Nature       Date:  1997-11-13       Impact factor: 49.962

10.  Role of beta-turn residues in beta-hairpin formation and stability in designed peptides.

Authors:  M Ramírez-Alvarado; F J Blanco; H Niemann; L Serrano
Journal:  J Mol Biol       Date:  1997-11-07       Impact factor: 5.469

View more
  12 in total

1.  Design, synthesis, and photochemical validation of peptide linchpins containing the S,S-tetrazine phototrigger.

Authors:  Mohannad Abdo; Stephen P Brown; Joel R Courter; Matthew J Tucker; Robin M Hochstrasser; Amos B Smith
Journal:  Org Lett       Date:  2012-06-26       Impact factor: 6.005

2.  Understanding the key factors that control the rate of beta-hairpin folding.

Authors:  Deguo Du; Yongjin Zhu; Cheng-Yen Huang; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

3.  Bending elasticity of anti-parallel beta-sheets.

Authors:  Seungho Choe; Sean X Sun
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

Review 4.  Photoremovable protecting groups in chemistry and biology: reaction mechanisms and efficacy.

Authors:  Petr Klán; Tomáš Šolomek; Christian G Bochet; Aurélien Blanc; Richard Givens; Marina Rubina; Vladimir Popik; Alexey Kostikov; Jakob Wirz
Journal:  Chem Rev       Date:  2012-12-21       Impact factor: 60.622

5.  The design and synthesis of alanine-rich α-helical peptides constrained by an S,S-tetrazine photochemical trigger: a fragment union approach.

Authors:  Joel R Courter; Mohannad Abdo; Stephen P Brown; Matthew J Tucker; Robin M Hochstrasser; Amos B Smith
Journal:  J Org Chem       Date:  2013-12-20       Impact factor: 4.354

6.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

7.  Mutational effects on the folding dynamics of a minimized hairpin.

Authors:  Michele Scian; Irene Shu; Katherine A Olsen; Khalil Hassam; Niels H Andersen
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

8.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991

9.  How quickly can a β-hairpin fold from its transition state?

Authors:  Beatrice N Markiewicz; Lijiang Yang; Robert M Culik; Yi Qin Gao; Feng Gai
Journal:  J Phys Chem B       Date:  2014-03-17       Impact factor: 2.991

10.  MSH3 polymorphisms and protein levels affect CAG repeat instability in Huntington's disease mice.

Authors:  Stéphanie Tomé; Kevin Manley; Jodie P Simard; Greg W Clark; Meghan M Slean; Meera Swami; Peggy F Shelbourne; Elisabeth R M Tillier; Darren G Monckton; Anne Messer; Christopher E Pearson
Journal:  PLoS Genet       Date:  2013-02-28       Impact factor: 5.917

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.