Literature DB >> 9539732

Sequence-specific polypeptoids: a diverse family of heteropolymers with stable secondary structure.

K Kirshenbaum1, A E Barron, R A Goldsmith, P Armand, E K Bradley, K T Truong, K A Dill, F E Cohen, R N Zuckermann.   

Abstract

We have synthesized and characterized a family of structured oligo-N-substituted-glycines (peptoids) up to 36 residues in length by using an efficient solid-phase protocol to incorporate chemically diverse side chains in a sequence-specific fashion. We investigated polypeptoids containing side chains with a chiral center adjacent to the main chain nitrogen. Some of these sequences have stable secondary structure, despite the achirality of the polymer backbone and its lack of hydrogen bond donors. In both aqueous and organic solvents, peptoid oligomers as short as five residues give rise to CD spectra that strongly resemble those of peptide alpha-helices. Differential scanning calorimetry and CD measurements show that polypeptoid secondary structure is highly stable and that unfolding is reversible and cooperative. Thermodynamic parameters obtained for unfolding are similar to those obtained for the alpha-helix to coil transitions of peptides. This class of biomimetic polymers may enable the design of self-assembling macromolecules with novel structures and functions.

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Year:  1998        PMID: 9539732      PMCID: PMC22484          DOI: 10.1073/pnas.95.8.4303

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Studies of synthetic helical peptides using circular dichroism and nuclear magnetic resonance.

Authors:  E K Bradley; J F Thomason; F E Cohen; P A Kosen; I D Kuntz
Journal:  J Mol Biol       Date:  1990-10-20       Impact factor: 5.469

2.  Alpha-helix to random coil transitions: determination of peptide concentration from the CD at the isodichroic point.

Authors:  M E Holtzer; A Holtzer
Journal:  Biopolymers       Date:  1992-12       Impact factor: 2.505

3.  CRITIQUE OF THE THEORY OF OPTICAL ACTIVITY OF HELICAL POLYMERS.

Authors:  W Moffitt; D D Fitts; J G Kirkwood
Journal:  Proc Natl Acad Sci U S A       Date:  1957-08-15       Impact factor: 11.205

4.  Chiral N-substituted glycines can form stable helical conformations.

Authors:  P Armand; K Kirshenbaum; A Falicov; R L Dunbrack; K A Dill; R N Zuckermann; F E Cohen
Journal:  Fold Des       Date:  1997

5.  NMR determination of the major solution conformation of a peptoid pentamer with chiral side chains.

Authors:  P Armand; K Kirshenbaum; R A Goldsmith; S Farr-Jones; A E Barron; K T Truong; K A Dill; D F Mierke; F E Cohen; R N Zuckermann; E K Bradley
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

6.  Theory for the folding and stability of globular proteins.

Authors:  K A Dill
Journal:  Biochemistry       Date:  1985-03-12       Impact factor: 3.162

Review 7.  Principles of protein folding--a perspective from simple exact models.

Authors:  K A Dill; S Bromberg; K Yue; K M Fiebig; D P Yee; P D Thomas; H S Chan
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

8.  Discovery of nanomolar ligands for 7-transmembrane G-protein-coupled receptors from a diverse N-(substituted)glycine peptoid library.

Authors:  R N Zuckermann; E J Martin; D C Spellmeyer; G B Stauber; K R Shoemaker; J M Kerr; G M Figliozzi; D A Goff; M A Siani; R J Simon
Journal:  J Med Chem       Date:  1994-08-19       Impact factor: 7.446

9.  An unnatural biopolymer.

Authors:  C Y Cho; E J Moran; S R Cherry; J C Stephans; S P Fodor; C L Adams; A Sundaram; J W Jacobs; P G Schultz
Journal:  Science       Date:  1993-09-03       Impact factor: 47.728

10.  Reassessment of the random coil conformation: vibrational CD study of proline oligopeptides and related polypeptides.

Authors:  R K Dukor; T A Keiderling
Journal:  Biopolymers       Date:  1991-12       Impact factor: 2.505

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  59 in total

1.  NCAD, a database integrating the intrinsic conformational preferences of non-coded amino acids.

Authors:  Guillem Revilla-López; Juan Torras; David Curcó; Jordi Casanovas; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Piotr Grodzinski; Carlos Alemán
Journal:  J Phys Chem B       Date:  2010-06-03       Impact factor: 2.991

2.  Short alkylated peptoid mimics of antimicrobial lipopeptides.

Authors:  Nathaniel P Chongsiriwatana; Tyler M Miller; Modi Wetzler; Sergei Vakulenko; Amy J Karlsson; Sean P Palecek; Shahriar Mobashery; Annelise E Barron
Journal:  Antimicrob Agents Chemother       Date:  2010-10-18       Impact factor: 5.191

3.  Construction of peptoids with all trans-amide backbones and peptoid reverse turns via the tactical incorporation of N-aryl side chains capable of hydrogen bonding.

Authors:  Joseph R Stringer; J Aaron Crapster; Ilia A Guzei; Helen E Blackwell
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

4.  Fragmentation Patterns and Mechanisms of Singly and Doubly Protonated Peptoids Studied by Collision Induced Dissociation.

Authors:  Jianhua Ren; Yuan Tian; Ekram Hossain; Michael D Connolly
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-01       Impact factor: 3.109

5.  Rationally designed peptoids modulate aggregation of amyloid-beta 40.

Authors:  J Phillip Turner; Tammy Lutz-Rechtin; Kelly A Moore; Lauren Rogers; Omkar Bhave; Melissa A Moss; Shannon L Servoss
Journal:  ACS Chem Neurosci       Date:  2014-04-16       Impact factor: 4.418

6.  Antimicrobial peptoids are effective against Pseudomonas aeruginosa biofilms.

Authors:  Rinki Kapoor; Mayken W Wadman; Michelle T Dohm; Ann M Czyzewski; Alfred M Spormann; Annelise E Barron
Journal:  Antimicrob Agents Chemother       Date:  2011-03-21       Impact factor: 5.191

7.  Close mimicry of lung surfactant protein B by "clicked" dimers of helical, cationic peptoids.

Authors:  Michelle T Dohm; Shannon L Seurynck-Servoss; Jiwon Seo; Ronald N Zuckermann; Annelise E Barron
Journal:  Biopolymers       Date:  2009       Impact factor: 2.505

8.  Novel peptoid building blocks: synthesis of functionalized aromatic helix-inducing submonomers.

Authors:  Jiwon Seo; Annelise E Barron; Ronald N Zuckermann
Journal:  Org Lett       Date:  2010-02-05       Impact factor: 6.005

9.  De novo structure prediction and experimental characterization of folded peptoid oligomers.

Authors:  Glenn L Butterfoss; Barney Yoo; Jonathan N Jaworski; Ilya Chorny; Ken A Dill; Ronald N Zuckermann; Richard Bonneau; Kent Kirshenbaum; Vincent A Voelz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

10.  Peptoids that mimic the structure, function, and mechanism of helical antimicrobial peptides.

Authors:  Nathaniel P Chongsiriwatana; James A Patch; Ann M Czyzewski; Michelle T Dohm; Andrey Ivankin; David Gidalevitz; Ronald N Zuckermann; Annelise E Barron
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

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