Literature DB >> 3986190

Theory for the folding and stability of globular proteins.

K A Dill.   

Abstract

Using lattice statistical mechanics, we develop theory to account for the folding of a heteropolymer molecule such as a protein to the globular and soluble state. Folding is assumed to be driven by the association of solvophobic monomers to avoid solvent and opposed by the chain configurational entropy. Theory predicts a phase transition as a function of temperature or solvent character. Molecules that are too short or too long or that have too few solvophobic residues are predicted not to fold. Globular molecules should have a largely solvophobic core, but there is an entropic tendency for some residues to be "out of place", particularly in small molecules. For long chains, molecules comprised of globular domains are predicted to be thermodynamically more stable than spherical molecules. The number of accessible conformations in the globular state is calculated to be an exceedingly small fraction of the number available to the random coil. Previous estimates of this number, which have motivated kinetic theories of folding, err by many tens of orders of magnitude.

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Year:  1985        PMID: 3986190     DOI: 10.1021/bi00327a032

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  186 in total

1.  Thermodynamics of DNA binding of MM17, a 'single chain dimer' of transcription factor MASH-1.

Authors:  M Sieber; R K Allemann
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

2.  The topomer-sampling model of protein folding.

Authors:  D A Debe; M J Carlson; W A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

3.  Rapid compaction during RNA folding.

Authors:  Rick Russell; Ian S Millett; Mark W Tate; Lisa W Kwok; Bradley Nakatani; Sol M Gruner; Simon G J Mochrie; Vijay Pande; Sebastian Doniach; Daniel Herschlag; Lois Pollack
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

4.  Viewing protein folding from many perspectives.

Authors:  Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

5.  Observation of strange kinetics in protein folding.

Authors:  J Sabelko; J Ervin; M Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

6.  Surfing on protein folding energy landscapes.

Authors:  Joost W H Schymkowitz; Frederic Rousseau; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

7.  Comparison of protein fragments identified by limited proteolysis and by computational cutting of proteins.

Authors:  Chung-Jung Tsai; Patrizia Polverino de Laureto; Angelo Fontana; Ruth Nussinov
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

8.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

9.  Using contact statistics to characterize structure transformation of biopolymer ensembles.

Authors:  Priyojit Das; Rosela Golloshi; Rachel Patton McCord; Tongye Shen
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

10.  Staphylococcal nuclease folding intermediate characterized by hydrogen exchange and NMR spectroscopy.

Authors:  M D Jacobs; R O Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

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