Literature DB >> 9449343

Helix-specific interactions induce condensation of guanosine four-stranded helices in concentrated salt solutions.

P Mariani1, F Ciuchi, L Saturni.   

Abstract

Deoxyguanosine-5'-monophosphate in water self-associates into stable structures, which include liquid-crystalline hexagonal and cholesteric phases. The structural unit is a four-stranded helix, composed of stacked Hoogsteen-bonded guanosine quartets. By using the osmotic stress method, we recently measured the force between helices in KCl solutions up to 2 M. In addition to the long-range electrostatic force, a short-range hydration repulsive contribution was recognized. The hydration repulsion is exponential, and shows a decay length independent from the ionic strength of the solution. Here, we report that more concentrated KCl solutions cause condensation of the guanosine helix in a hexagonal phase with constant equilibrium separation of approximately 7 A between helix surfaces. Long-range attraction, which induces the self-assembly, and short-range repulsion, which prevents the contact between the helices, are implied. By using osmotic stress, the force needed to push helices closer from the spontaneously assumed position has been measured. The attractive force was then estimated as a difference between the net force and the repulsive contribution, revealing an exponential decay length about two times larger than that of the short-range repulsion. The agreement with the helix interaction theory introduced recently by Kornyshev and Leikin (Kornyshev, A. A., and S. Leikin, 1997. Theory of interaction between helical molecules. J. Phys. Chem. 107:3656-3674) suggests that the repulsive and attractive forces originate from helix-specific interactions.

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Year:  1998        PMID: 9449343      PMCID: PMC1299395          DOI: 10.1016/S0006-3495(98)77800-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

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Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

2.  Unusual lyotropic polymorphism of deoxyguanosine-5'-monophosphate: X-ray diffraction analysis of the correlation between self-assembling and phase behavior.

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-07

3.  Measured entropy and enthalpy of hydration as a function of distance between DNA double helices.

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Journal:  Phys Rev A       Date:  1991-10-15       Impact factor: 3.140

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Journal:  Phys Rev A       Date:  1991-07-15       Impact factor: 3.140

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Authors:  V A Bloomfield
Journal:  Curr Opin Struct Biol       Date:  1996-06       Impact factor: 6.809

6.  Supramolecular self-assembly of d(TGG)4, synergistic effects of K+ and Mg2+.

Authors:  F M Chen
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

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Authors:  V A Parsegian; R P Rand; N L Fuller; D C Rau
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

8.  A phase diagram for sodium and potassium ion control of polymorphism in telomeric DNA.

Authors:  T Miura; J M Benevides; G J Thomas
Journal:  J Mol Biol       Date:  1995-04-28       Impact factor: 5.469

9.  Direct measurement of forces between self-assembled proteins: temperature-dependent exponential forces between collagen triple helices.

Authors:  S Leikin; D C Rau; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-04       Impact factor: 11.205

10.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

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  7 in total

1.  Dynamic light scattering and 31P NMR study of the self-assembly of deoxyguanosine 5'-monophosphate: the effect of added salt.

Authors:  L Spindler; I Drevensek-Olenik; M Copic; J Cerar; J Skerjanc; P Mariani
Journal:  Eur Phys J E Soft Matter       Date:  2004-01       Impact factor: 1.890

2.  Symmetry laws for interaction between helical macromolecules.

Authors:  A A Kornyshev; S Leikin
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

3.  How soft are biological helices? A measure of axial and lateral force constants in folate quadruplexes by high-pressure X-ray diffraction.

Authors:  Francesco Federiconi; Michele Mattioni; Enrico J Baldassarri; Maria Grazia Ortore; Paolo Mariani
Journal:  Eur Biophys J       Date:  2011-06-29       Impact factor: 1.733

4.  Sticking and stacking: Persistent ordering of fragmented DNA analogs.

Authors:  Rudolf Podgornik
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-09       Impact factor: 11.205

5.  Detection of DNA hybridization using the near-infrared band-gap fluorescence of single-walled carbon nanotubes.

Authors:  Esther S Jeng; Anthonie E Moll; Amanda C Roy; Joseph B Gastala; Michael S Strano
Journal:  Nano Lett       Date:  2006-03       Impact factor: 11.189

6.  Guanosine quadruplexes in solution: a small-angle x-ray scattering analysis of temperature effects on self-assembling of deoxyguanosine monophosphate.

Authors:  P Mariani; F Spinozzi; F Federiconi; M G Ortore; H Amenitsch; L Spindler; I Drevensek-Olenik
Journal:  J Nucleic Acids       Date:  2010-06-21

7.  K vs. Na Effects on the Self-Assembly of Guanosine 5'-Monophosphate: A Solution SAXS Structural Study+.

Authors:  Enrico Junior Baldassarri; Maria Grazia Ortore; Francesco Spinozzi; Adam Round; Claudio Ferrero; Paolo Mariani
Journal:  Nanomaterials (Basel)       Date:  2020-03-28       Impact factor: 5.076

  7 in total

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