Literature DB >> 15024613

Dynamic light scattering and 31P NMR study of the self-assembly of deoxyguanosine 5'-monophosphate: the effect of added salt.

L Spindler1, I Drevensek-Olenik, M Copic, J Cerar, J Skerjanc, P Mariani.   

Abstract

Self-assembling and dynamical properties of deoxyguanosine 5'-monophosphate in isotropic aqueous solutions were studied by (31)P NMR spectroscopy and dynamic light scattering (DLS). All solutions had the same c = 4 wt% guanosine concentration, while the added KCl molarity ranged from 0 to 1.5 M. (31)P NMR measurements show that potassium ions strongly enhance the stacking process of guanosine tetramers until a saturation is reached at 0.1 M KCl with more than 70% of the molecules aggregated. Polarized light scattering reveals the presence of a fast relaxation mode that arises from the translational dynamics of the self-assembled stacks. The diffusion coefficient of this mode shows a strong dependence on molarity of added salt, which can be described in terms of the coupled mode and counterion condensation theories for polyelectrolyte solutions. Depolarized light scattering reveals the rotational dynamics of the self-assembled stacks which exhibits a pronounced slowing down with increasing the added salt content.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15024613     DOI: 10.1140/epje/e2004-00037-0

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  14 in total

1.  Variational charge renormalization in charged systems.

Authors:  R R Netz; H Orland
Journal:  Eur Phys J E Soft Matter       Date:  2003-07       Impact factor: 1.890

2.  Crystal structure of four-stranded Oxytricha telomeric DNA.

Authors:  C Kang; X Zhang; R Ratliff; R Moyzis; A Rich
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

Review 3.  Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomer DNA.

Authors:  W Guschlbauer; J F Chantot; D Thiele
Journal:  J Biomol Struct Dyn       Date:  1990-12

4.  Unusual lyotropic polymorphism of deoxyguanosine-5'-monophosphate: X-ray diffraction analysis of the correlation between self-assembling and phase behavior.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-07

5.  Helix-specific interactions induce condensation of guanosine four-stranded helices in concentrated salt solutions.

Authors:  P Mariani; F Ciuchi; L Saturni
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

6.  Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops.

Authors:  W I Sundquist; A Klug
Journal:  Nature       Date:  1989-12-14       Impact factor: 49.962

Review 7.  G-quartet structures in telomeric DNA.

Authors:  J R Williamson
Journal:  Annu Rev Biophys Biomol Struct       Date:  1994

8.  The high-resolution crystal structure of a parallel-stranded guanine tetraplex.

Authors:  G Laughlan; A I Murchie; D G Norman; M H Moore; P C Moody; D M Lilley; B Luisi
Journal:  Science       Date:  1994-07-22       Impact factor: 47.728

9.  Potassium-dependent folding: a key to intracellular delivery of G-quartet oligonucleotides as HIV inhibitors.

Authors:  Naijie Jing; Weijun Xiong; Yongli Guan; Luke Pallansch; Shimei Wang
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

10.  Structural organization of guanosine derivatives in dilute solutions: small angle neutron scattering analysis.

Authors:  F Carsughi; M Ceretti; P Mariani
Journal:  Eur Biophys J       Date:  1992       Impact factor: 1.733

View more
  7 in total

1.  Chiral symmetry breaking by spatial confinement in tactoidal droplets of lyotropic chromonic liquid crystals.

Authors:  Luana Tortora; Oleg D Lavrentovich
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-14       Impact factor: 11.205

2.  Effect of base sequence on g-wire formation in solution.

Authors:  Lea Spindler; Martin Rigler; Irena Drevensek-Olenik; Nason Ma'ani Hessari; Mateus Webba da Silva
Journal:  J Nucleic Acids       Date:  2010-06-03

3.  Sequence-based separation of single-stranded DNA using nucleotides in capillary electrophoresis: focus on phosphate.

Authors:  Xueru Zhang; Linda B McGown
Journal:  Electrophoresis       Date:  2013-06       Impact factor: 3.535

4.  Supramolecular Polymorphism of (G4C2)n Repeats Associated with ALS and FTD.

Authors:  Melani Potrč; Nerea Sebastián; Miha Škarabot; Irena Drevenšek-Olenik; Lea Spindler
Journal:  Int J Mol Sci       Date:  2021-04-26       Impact factor: 5.923

5.  Guanosine quadruplexes in solution: a small-angle x-ray scattering analysis of temperature effects on self-assembling of deoxyguanosine monophosphate.

Authors:  P Mariani; F Spinozzi; F Federiconi; M G Ortore; H Amenitsch; L Spindler; I Drevensek-Olenik
Journal:  J Nucleic Acids       Date:  2010-06-21

6.  G-quadruplex guanosine gels and single walled carbon nanotubes.

Authors:  Yuehua Yu; Victor L Pushparaj; Omkaram Nalamasu; Linda B McGown
Journal:  Molecules       Date:  2013-12-11       Impact factor: 4.411

7.  Backbone-free duplex-stacked monomer nucleic acids exhibiting Watson-Crick selectivity.

Authors:  Gregory P Smith; Tommaso P Fraccia; Marco Todisco; Giuliano Zanchetta; Chenhui Zhu; Emily Hayden; Tommaso Bellini; Noel A Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.