Literature DB >> 9788947

Symmetry laws for interaction between helical macromolecules.

A A Kornyshev1, S Leikin.   

Abstract

The power of symmetry laws is applied in many scientific areas from elementary particle physics to structural biology. The structures of many biological helices, including DNA, were resolved with the use of pertinent symmetry constraints. It was not recognized, however, that similar constraints determine cardinal features of helix-helix interactions vital for many recognition and assembly reactions in living cells. We now formulate such symmetry-determined interaction laws and apply them to explain DNA "over-winding" from 10.5 base pairs per turn in solution to 10 in hydrated fibers, counterion specificity in DNA condensation, and forces observed over the last 15 A of separation between DNA, collagen, and four-stranded guanosine helices.

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Year:  1998        PMID: 9788947      PMCID: PMC1299926          DOI: 10.1016/S0006-3495(98)77696-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

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Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

2.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

3.  Helical parameters of DNA do not change when DNA fibers are wetted: X-ray diffraction study.

Authors:  S B Zimmerman; B H Pheiffer
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

4.  Hydration structure of a collagen peptide.

Authors:  J Bella; B Brodsky; H M Berman
Journal:  Structure       Date:  1995-09-15       Impact factor: 5.006

Review 5.  Role of hydration and water structure in biological and colloidal interactions.

Authors:  J Israelachvili; H Wennerström
Journal:  Nature       Date:  1996-01-18       Impact factor: 49.962

6.  Direct measurement of forces between self-assembled proteins: temperature-dependent exponential forces between collagen triple helices.

Authors:  S Leikin; D C Rau; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-04       Impact factor: 11.205

7.  Monomolecular condensation of lambda-DNA induced by cobalt hexamine.

Authors:  J Widom; R L Baldwin
Journal:  Biopolymers       Date:  1983-06       Impact factor: 2.505

8.  Helical periodicity of DNA determined by enzyme digestion.

Authors:  D Rhodes; A Klug
Journal:  Nature       Date:  1980-08-07       Impact factor: 49.962

9.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

10.  Solvent hydrogen-bond network in protein self-assembly: solvation of collagen triple helices in nonaqueous solvents.

Authors:  N Kuznetsova; D C Rau; V A Parsegian; S Leikin
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

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  7 in total

1.  Azimuthal frustration and bundling in columnar DNA aggregates.

Authors:  H M Harreis; C N Likos; H Löwen
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

2.  Statistical mechanics of columnar DNA assemblies.

Authors:  A Wynveen; D J Lee; A A Kornyshev
Journal:  Eur Phys J E Soft Matter       Date:  2005-03       Impact factor: 1.890

3.  The homology recognition well as an innate property of DNA structure.

Authors:  Alexei A Kornyshev; Aaron Wynveen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-09       Impact factor: 11.205

4.  Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging.

Authors:  A G Cherstvy; V B Teif
Journal:  J Biol Phys       Date:  2013-01-17       Impact factor: 1.365

5.  Helical structure determines different susceptibilities of dsDNA, dsRNA, and tsDNA to counterion-induced condensation.

Authors:  Alexei A Kornyshev; Sergey Leikin
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

6.  Sequence-dependent DNA condensation and the electrostatic zipper.

Authors:  J C Sitko; E M Mateescu; H G Hansma
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

7.  Electrostatic interaction between helical macromolecules in dense aggregates: an impetus for DNA poly- and meso-morphism.

Authors:  A A Kornyshev; S Leikin
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

  7 in total

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