Literature DB >> 9390407

High-resolution heteronuclear NMR of human ubiquitin in an aqueous liquid crystalline medium.

A Bax1, N Tjandra.   

Abstract

A mixture of dihexanoyl phosphatidylcholine and dimyristoyl phosphatidylcholine in water forms disc-shaped particles, often referred to as bicelles [Sanders and Schwonek (1992) Biochemistry, 31, 8898-8905]. These adopt an ordered, liquid crystalline phase, which can be maintained at very low concentrations of the bicelles (down to 3% w/v). At this concentration the spacing between individual bicelles, on average, exceeds 300 A. The bicelles are shown to have a negligible effect on the rotational diffusion of ubiquitin as judged by the 15N T1p values of the backbone amides relative to those in isotropic aqueous solution. The protein exhibits a residual degree of alignment which is proportional to the bicelle concentration, and approximately collinear with ubiquitin's rotational diffusion tensor. The degree of alignment obtained offers unique opportunities for studying the protein's structure and dynamics.

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Year:  1997        PMID: 9390407     DOI: 10.1023/a:1018308717741

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  Measurement of dipolar contributions to 1JCH splittings from magnetic-field dependence of J modulation in two-dimensional NMR spectra.

Authors:  N Tjandra; A Bax
Journal:  J Magn Reson       Date:  1997-02       Impact factor: 2.229

2.  Structure of ubiquitin refined at 1.8 A resolution.

Authors:  S Vijay-Kumar; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

3.  Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution.

Authors:  N Tjandra; J G Omichinski; A M Gronenborn; G M Clore; A Bax
Journal:  Nat Struct Biol       Date:  1997-09

4.  A quantitative J-correlation experiment for the accurate measurement of one-bond amide 15N-1H couplings in proteins.

Authors:  J R Tolman; J H Prestegard
Journal:  J Magn Reson B       Date:  1996-09

Review 5.  Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Crit Rev Biochem Mol Biol       Date:  1989       Impact factor: 8.250

6.  Magnetic alignment of duplex and quadruplex DNAs.

Authors:  H C Kung; K Y Wang; I Goljer; P H Bolton
Journal:  J Magn Reson B       Date:  1995-12

7.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

8.  Fast internal main-chain dynamics of human ubiquitin.

Authors:  D M Schneider; M J Dellwo; A J Wand
Journal:  Biochemistry       Date:  1992-04-14       Impact factor: 3.162

9.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

  9 in total
  53 in total

1.  Characterization of surfactant liquid crystal phases suitable for molecular alignment and measurement of dipolar couplings.

Authors:  L G Barrientos; C Dolan; A M Gronenborn
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

2.  A new approach for applying residual dipolar couplings as restraints in structure elucidation.

Authors:  J Meiler; N Blomberg; M Nilges; C Griesinger
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

3.  Transverse relaxation optimised spin-state selective NMR experiments for measurement of residual dipolar couplings.

Authors:  P Permi; A Annila
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

4.  Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis.

Authors:  P Bayer; L Varani; G Varani
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

5.  A doublet-separated sensitivity-enhanced HSQC for the determination of scalar and dipolar one-bond J-couplings.

Authors:  F Cordier; A J Dingley; S Grzesiek
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

6.  The use of dipolar couplings for determining the solution structure of rat apo-S100B(betabeta).

Authors:  A C Drohat; N Tjandra; D M Baldisseri; D J Weber
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

7.  Paramagnetism-based versus classical constraints: an analysis of the solution structure of Ca Ln calbindin D9k.

Authors:  I Bertini; A Donaire; B Jiménez; C Luchinat; G Parigi; M Piccioli; L Poggi
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

8.  Efficiency of paramagnetism-based constraints to determine the spatial arrangement of alpha-helical secondary structure elements.

Authors:  Ivano Bertini; Marco Longinetti; Claudio Luchinat; Giacomo Parigi; Luca Sgheri
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

9.  Structure refinement of flexible proteins using dipolar couplings: application to the protein p8MTCP1.

Authors:  Hélène Déméné; Thierry Ducat; Philippe Barthe; Marc-André Delsuc; Christian Roumestand
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

10.  A simple apparatus for generating stretched polyacrylamide gels, yielding uniform alignment of proteins and detergent micelles.

Authors:  J J Chou; S Gaemers; B Howder; J M Louis; A Bax
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

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