Literature DB >> 9303001

Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solution.

N Tjandra1, J G Omichinski, A M Gronenborn, G M Clore, A Bax.   

Abstract

Anisotropy of the molecular magnetic susceptibility gives rise to a small degree of alignment. The resulting residual dipolar couplings, which can now be measured with the advent of higher magnetic fields in NMR, contain information on the orientation of the internuclear vectors relative to the molecular magnetic susceptibility tensor, thereby providing information on long range order that is not accessible by any of the solution NMR parameters currently used in structure determination. Thus, the dipolar couplings constitute unique and powerful restraints in determining the structures of magnetically oriented macromolecules in solution. The method is demonstrated on a complex of the DNA-binding domain of the transcription factor GATA-1 with a 16 base pair oligodeoxyribonucleotide.

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Year:  1997        PMID: 9303001     DOI: 10.1038/nsb0997-732

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  143 in total

1.  Assessment of zinc finger orientations by residual dipolar coupling constants.

Authors:  V Tsui; L Zhu; T H Huang; P E Wright; D A Case
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  Characterization of surfactant liquid crystal phases suitable for molecular alignment and measurement of dipolar couplings.

Authors:  L G Barrientos; C Dolan; A M Gronenborn
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

3.  Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis.

Authors:  P Bayer; L Varani; G Varani
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

4.  Completeness of NOEs in protein structure: a statistical analysis of NMR.

Authors:  J F Doreleijers; M L Raves; T Rullmann; R Kaptein
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

5.  An approach for high-throughput structure determination of proteins by NMR spectroscopy.

Authors:  A Medek; E T Olejniczak; R P Meadows; S W Fesik
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

6.  The use of dipolar couplings for determining the solution structure of rat apo-S100B(betabeta).

Authors:  A C Drohat; N Tjandra; D M Baldisseri; D J Weber
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

7.  Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization.

Authors:  G M Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

8.  An easy way to include weak alignment constraints into NMR structure calculations.

Authors:  H J Sass; G Musco; S J Stahl; P T Wingfield; S Grzesiek
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

9.  Paramagnetism-based versus classical constraints: an analysis of the solution structure of Ca Ln calbindin D9k.

Authors:  I Bertini; A Donaire; B Jiménez; C Luchinat; G Parigi; M Piccioli; L Poggi
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

10.  Functional dynamics in the active site of the ribonuclease binase.

Authors:  L Wang; Y Pang; T Holder; J R Brender; A V Kurochkin; E R Zuiderweg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

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