Literature DB >> 9204558

Chi 1 angle information from a simple two-dimensional NMR experiment that identifies trans 3JNC gamma couplings in isotopically enriched proteins.

J S Hu1, A Bax.   

Abstract

New quantitative J correlation experiments are used for measuring all two- and three-bond couplings between 15N and aliphatic side-chain carbons in proteins uniformly enriched in 13C and 15N. Results show that 3JNC beta and 2JNC beta invariably are very small. Therefore, a simple and relatively sensitive two-dimensional spin-echo difference experiment can be used to identify residues with a 3JN gamma coupling substantially larger than 1 Hz, indicative of a trans arrangement between N and C gamma. This measurement therefore provides chi 1 angle information for residues with an aliphatic C gamma carbon, and thereby also aids in making stereospecific assignments of H beta resonances. Experiments are demonstrated for ubiquitin and for a complex between calmodulin and a 26-residue peptide.

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Year:  1997        PMID: 9204558     DOI: 10.1023/a:1018691228238

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  5 in total

1.  Stereospecific assignment of beta-methylene protons in larger proteins using 3D 15N-separated Hartmann-Hahn and 13C-separated rotating frame Overhauser spectroscopy.

Authors:  G M Clore; A Bax; A M Gronenborn
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

2.  Protein structures in solution by nuclear magnetic resonance and distance geometry. The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN.

Authors:  G Wagner; W Braun; T F Havel; T Schaumann; N Go; K Wüthrich
Journal:  J Mol Biol       Date:  1987-08-05       Impact factor: 5.469

3.  Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing.

Authors:  J Kraulis; G M Clore; M Nilges; T A Jones; G Pettersson; J Knowles; A M Gronenborn
Journal:  Biochemistry       Date:  1989-09-05       Impact factor: 3.162

4.  Measurement of HN-H alpha J couplings in calcium-free calmodulin using new 2D and 3D water-flip-back methods.

Authors:  H Kuboniwa; S Grzesiek; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1994-11       Impact factor: 2.835

5.  Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein.

Authors:  A J Wand; J L Urbauer; R P McEvoy; R J Bieber
Journal:  Biochemistry       Date:  1996-05-14       Impact factor: 3.162

  5 in total
  25 in total

1.  Simultaneous measurement of protein one-bond and two-bond nitrogen-carbon coupling constants using an internally referenced quantitative J-correlated [(15)N,(1)H]-TROSY-HNC experiment.

Authors:  Hans L J Wienk; Mitcheell M Martínez; Gary N Yalloway; Jürgen M Schmidt; Carlos Pérez; Heinz Rüterjans; Frank Löhr
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

2.  A New Experiment for the Measurement of nJ(C,P) Coupling Constants Including 3J(C4'i,Pi) and 3J(C4'i,Pi+1) in Oligonucleotides.

Authors:  C Richter; B Reif; K Wörner; S Quant; J P Marino; J W Engels; C Griesinger; H Schwalbe
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

3.  Electrostatic interaction between oxysterol-binding protein and VAMP-associated protein A revealed by NMR and mutagenesis studies.

Authors:  Kyoko Furuita; JunGoo Jee; Harumi Fukada; Masaki Mishima; Chojiro Kojima
Journal:  J Biol Chem       Date:  2010-02-23       Impact factor: 5.157

4.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

5.  Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR.

Authors:  Zhengrong Wu; Frank Delaglio; Keith Wyatt; Graeme Wistow; Ad Bax
Journal:  Protein Sci       Date:  2005-10-31       Impact factor: 6.725

6.  Backbone and side chain resonance assignmentsof a TRAV14-3 mouse T cell receptor domain.

Authors:  Jin-Shan Hu; Daniel Plaksin; David H Margulies
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

7.  Rapid and accurate structure determination of coiled-coil domains using NMR dipolar couplings: application to cGMP-dependent protein kinase Ialpha.

Authors:  Jason R Schnell; Guo-Ping Zhou; Markus Zweckstetter; Alan C Rigby; James J Chou
Journal:  Protein Sci       Date:  2005-09       Impact factor: 6.725

8.  The structure of phospholamban pentamer reveals a channel-like architecture in membranes.

Authors:  Kirill Oxenoid; James J Chou
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

9.  Structure of the IGF-binding domain of the insulin-like growth factor-binding protein-5 (IGFBP-5): implications for IGF and IGF-I receptor interactions.

Authors:  W Kalus; M Zweckstetter; C Renner; Y Sanchez; J Georgescu; M Grol; D Demuth; R Schumacher; C Dony; K Lang; T A Holak
Journal:  EMBO J       Date:  1998-11-16       Impact factor: 11.598

10.  Side-chain conformational heterogeneity of intermediates in the Escherichia coli dihydrofolate reductase catalytic cycle.

Authors:  Lisa M Tuttle; H Jane Dyson; Peter E Wright
Journal:  Biochemistry       Date:  2013-05-07       Impact factor: 3.162

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