Literature DB >> 16260758

Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR.

Zhengrong Wu1, Frank Delaglio, Keith Wyatt, Graeme Wistow, Ad Bax.   

Abstract

The solution structure of murine gammaS-crystallin (gammaS) has been determined by multidimensional triple resonance NMR spectroscopy, using restraints derived from two sets of dipolar couplings, recorded in different alignment media, and supplemented by a small number of NOE distance restraints. gammaS consists of two topologically similar domains, arranged with an approximate twofold symmetry, and each domain shows close structural homology to closely related (approximately 50% sequence identity) domains found in other members of the gamma-crystallin family. Each domain consists of two four-strand "Greek key" beta-sheets. Although the domains are tightly anchored to one another by the hydrophobic surfaces of the two inner Greek key motifs, the N-arm, the interdomain linker and several turn regions show unexpected flexibility and disorder in solution. This may contribute entropic stabilization to the protein in solution, but may also indicate nucleation sites for unfolding or other structural transitions. The method used for solving the gammaS structure relies on the recently introduced molecular fragment replacement method, which capitalizes on the large database of protein structures previously solved by X-ray crystallography and NMR.

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Year:  2005        PMID: 16260758      PMCID: PMC2253246          DOI: 10.1110/ps.051635205

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  66 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Improving the accuracy of NMR structures of DNA by means of a database potential of mean force describing base-base positional interactions.

Authors:  J Kuszewski; C Schwieters; G M Clore
Journal:  J Am Chem Soc       Date:  2001-05-02       Impact factor: 15.419

3.  Protein side-chain rotamers from dipolar couplings in a liquid crystalline phase.

Authors:  J J Chou; A Bax
Journal:  J Am Chem Soc       Date:  2001-04-25       Impact factor: 15.419

4.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

5.  Evaluation of uncertainty in alignment tensors obtained from dipolar couplings.

Authors:  Markus Zweckstetter; Ad Bax
Journal:  J Biomol NMR       Date:  2002-06       Impact factor: 2.835

6.  X-ray analysis of beta B2-crystallin and evolution of oligomeric lens proteins.

Authors:  B Bax; R Lapatto; V Nalini; H Driessen; P F Lindley; D Mahadevan; T L Blundell; C Slingsby
Journal:  Nature       Date:  1990-10-25       Impact factor: 49.962

Review 7.  Lens crystallins: the evolution and expression of proteins for a highly specialized tissue.

Authors:  G J Wistow; J Piatigorsky
Journal:  Annu Rev Biochem       Date:  1988       Impact factor: 23.643

Review 8.  Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Crit Rev Biochem Mol Biol       Date:  1989       Impact factor: 8.250

9.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

10.  Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values.

Authors:  M Ottiger; A Bax
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

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  25 in total

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Authors:  Michelle Yu Sung Hooi; Mark J Raftery; Roger John Willis Truscott
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-06-14       Impact factor: 4.799

2.  Folding and stability of the isolated Greek key domains of the long-lived human lens proteins gammaD-crystallin and gammaS-crystallin.

Authors:  Ishara A Mills; Shannon L Flaugh; Melissa S Kosinski-Collins; Jonathan A King
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3.  Top-down approach in protein RDC data analysis: de novo estimation of the alignment tensor.

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Journal:  J Biomol NMR       Date:  2007-06-26       Impact factor: 2.835

4.  Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints.

Authors:  Alexander Grishaev; Vitali Tugarinov; Lewis E Kay; Jill Trewhella; Ad Bax
Journal:  J Biomol NMR       Date:  2007-11-16       Impact factor: 2.835

5.  An improved algorithm for MFR fragment assembly.

Authors:  Georg Kontaxis
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

6.  γ-Crystallins of the chicken lens: remnants of an ancient vertebrate gene family in birds.

Authors:  Yingwei Chen; Vatsala Sagar; Hoay-Shuen Len; Katherine Peterson; Jianguo Fan; Sanghamitra Mishra; John McMurtry; Phillip A Wilmarth; Larry L David; Graeme Wistow
Journal:  FEBS J       Date:  2016-03-11       Impact factor: 5.542

7.  Separating instability from aggregation propensity in γS-crystallin variants.

Authors:  William D Brubaker; J Alfredo Freites; Kory J Golchert; Rebecca A Shapiro; Vasilios Morikis; Douglas J Tobias; Rachel W Martin
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8.  Solution properties of γ-crystallins: hydration of fish and mammal γ-crystallins.

Authors:  Huaying Zhao; Yingwei Chen; Lenka Rezabkova; Zhengrong Wu; Graeme Wistow; Peter Schuck
Journal:  Protein Sci       Date:  2013-11-27       Impact factor: 6.725

9.  Solution properties of γ-crystallins: compact structure and low frictional ratio are conserved properties of diverse γ-crystallins.

Authors:  Yingwei Chen; Huaying Zhao; Peter Schuck; Graeme Wistow
Journal:  Protein Sci       Date:  2013-11-28       Impact factor: 6.725

10.  Exploring the aggregation propensity of γS-crystallin protein variants using two-dimensional spectroscopic tools.

Authors:  Jun Jiang; Kory J Golchert; Carolyn N Kingsley; William D Brubaker; Rachel W Martin; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2013-11-12       Impact factor: 2.991

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