Literature DB >> 9177191

Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease.

M E Wall1, S E Ealick, S M Gruner.   

Abstract

We have developed methods for obtaining and characterizing three-dimensional maps of the reciprocal-space distribution of diffuse x-ray scattering from protein crystals, and have used the methods to study the nature of disorder in crystals of Staphylococcal nuclease. Experimentally obtained maps are 99.5% complete in the reciprocal-space resolution range of 10 A-2.5 A, show symmetry consistent with the P41 space group of the unit cell, and are highly reproducible. Quantitative comparisons of the data with three-dimensional simulations imply liquid-like motions of the protein [Caspar, D. L. D., Clarage, J., Salunke, D. M. & Clarage, M. (1988) Nature (London) 332, 659-662], with a correlation length of 10 A and a root-mean-square displacement of 0.36 A.

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Year:  1997        PMID: 9177191      PMCID: PMC21023          DOI: 10.1073/pnas.94.12.6180

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Rigid protein motion as a model for crystallographic temperature factors.

Authors:  J Kuriyan; W I Weis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-01       Impact factor: 11.205

2.  The crystal structure of the ternary complex of staphylococcal nuclease, Ca2+, and the inhibitor pdTp, refined at 1.65 A.

Authors:  P J Loll; E E Lattman
Journal:  Proteins       Date:  1989

3.  Molecular dynamics studied by analysis of the X-ray diffuse scattering from lysozyme crystals.

Authors:  J Doucet; J P Benoit
Journal:  Nature       Date:  1987 Feb 12-18       Impact factor: 49.962

Review 4.  Staphylococcal nuclease reviewed: a prototypic study in contemporary enzymology. I. Isolation; physical and enzymatic properties.

Authors:  P W Tucker; E E Hazen; F A Cotton
Journal:  Mol Cell Biochem       Date:  1978-12-22       Impact factor: 3.396

5.  A high resolution structure of an inhibitor complex of the extracellular nuclease of Staphylococcus aureus. I. Experimental procedures and chain tracing.

Authors:  A Arnone; C J Bier; F A Cotton; V W Day; E E Hazen; D C Richardson; A Yonath; J S Richardson
Journal:  J Biol Chem       Date:  1971-04-10       Impact factor: 5.157

6.  Staphylococcal nuclease: proposed mechanism of action based on structure of enzyme-thymidine 3',5'-bisphosphate-calcium ion complex at 1.5-A resolution.

Authors:  F A Cotton; E E Hazen; M J Legg
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

7.  Motions of tropomyosin. Crystal as metaphor.

Authors:  G N Phillips; J P Fillers; C Cohen
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

8.  Analysis of diffuse scattering from yeast initiator tRNA crystals.

Authors:  A R Kolatkar; J B Clarage; G N Phillips
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-03-01

9.  Liquid-like movements in crystalline insulin.

Authors:  D L Caspar; J Clarage; D M Salunke; M Clarage
Journal:  Nature       Date:  1988-04-14       Impact factor: 49.962

10.  The crystal structure of staphylococcal nuclease refined at 1.7 A resolution.

Authors:  T R Hynes; R O Fox
Journal:  Proteins       Date:  1991
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  24 in total

1.  Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.

Authors:  Demian Riccardi; Qiang Cui; George N Phillips
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

2.  Acoustic vibrations contribute to the diffuse scatter produced by ribosome crystals.

Authors:  Yury S Polikanov; Peter B Moore
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26

3.  Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease.

Authors:  Lars Meinhold; Jeremy C Smith
Journal:  Biophys J       Date:  2005-01-28       Impact factor: 4.033

4.  Visualizing networks of mobility in proteins.

Authors:  Mark A Wilson
Journal:  Nat Methods       Date:  2013-09       Impact factor: 28.547

5.  Toward resolution of ambiguity for the unfolded state.

Authors:  Gregory Beaucage
Journal:  Biophys J       Date:  2008-05-09       Impact factor: 4.033

6.  Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.

Authors:  Michael E Wall; Andrew H Van Benschoten; Nicholas K Sauter; Paul D Adams; James S Fraser; Thomas C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

Review 7.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

8.  Diffuse X-ray scattering to model protein motions.

Authors:  Michael E Wall; Paul D Adams; James S Fraser; Nicholas K Sauter
Journal:  Structure       Date:  2014-02-04       Impact factor: 5.006

9.  Measuring and modeling diffuse scattering in protein X-ray crystallography.

Authors:  Andrew H Van Benschoten; Lin Liu; Ana Gonzalez; Aaron S Brewster; Nicholas K Sauter; James S Fraser; Michael E Wall
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

10.  Correlated Motions from Crystallography beyond Diffraction.

Authors:  Steve P Meisburger; Nozomi Ando
Journal:  Acc Chem Res       Date:  2017-03-21       Impact factor: 22.384

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