Literature DB >> 3282173

Liquid-like movements in crystalline insulin.

D L Caspar1, J Clarage, D M Salunke, M Clarage.   

Abstract

Diffuse X-ray scattering from protein crystals provides information about molecular flexibility and packing irregularities. Here we analyse diffraction patterns from insulin crystals that show two types of scattering related to disorder: very diffuse, liquid-like diffraction, and haloes around the Bragg reflections. The haloes are due to coupled displacements of neighbouring molecules in the lattice, and the very diffuse scattering results from variations in atomic positions that are only locally correlated within each molecule. The measured intensity was digitally separated into three components: the Bragg reflections and associated haloes; the water and Compton scattering; and the scattering attributed to internal protein movements. We extend methods used to analyse disorder in membrane structures to simulate the diffuse scattering from crystalline insulin in terms of (1) the Patterson (autocorrelation) function of the ideal, ordered crystal structure, (2) the root-mean-square (r.m.s.) amplitude of the atomic movements, and (3) the mean distance over which these displacements are coupled. Movements of the atoms within the molecules, with r.m.s. amplitudes of 0.4-0.45 A, appear to be coupled over a range of approximately 6 A, as in a liquid. These locally coupled movements account for most of the disorder in the crystal. Also, the protein molecules, as a whole, jiggle in the lattice with r.m.s. amplitudes of approximately 0.25 A that appear to be significantly correlated only between nearest neighbours.

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Year:  1988        PMID: 3282173     DOI: 10.1038/332659a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  38 in total

1.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

2.  Vibrationally enhanced tunneling as a mechanism for enzymatic hydrogen transfer.

Authors:  W J Bruno; W Bialek
Journal:  Biophys J       Date:  1992-09       Impact factor: 4.033

3.  Flexibility in crystalline insulins.

Authors:  J Badger
Journal:  Biophys J       Date:  1992-03       Impact factor: 4.033

4.  Rigid protein motion as a model for crystallographic temperature factors.

Authors:  J Kuriyan; W I Weis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-01       Impact factor: 11.205

5.  Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.

Authors:  Demian Riccardi; Qiang Cui; George N Phillips
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

6.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

7.  Acoustic vibrations contribute to the diffuse scatter produced by ribosome crystals.

Authors:  Yury S Polikanov; Peter B Moore
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26

8.  Structural transitions in crystals of native aspartate carbamoyltransferase.

Authors:  J E Gouaux; W N Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  1989-02       Impact factor: 11.205

9.  Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease.

Authors:  Lars Meinhold; Jeremy C Smith
Journal:  Biophys J       Date:  2005-01-28       Impact factor: 4.033

10.  Diffuse x-ray scattering from tropomyosin crystals.

Authors:  S Chacko; G N Phillips
Journal:  Biophys J       Date:  1992-05       Impact factor: 4.033

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