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Literature DB >> 23985728

Visualizing networks of mobility in proteins.

Mark A Wilson.

Abstract

Mesh：

Substances：

Year: 2013 PMID： 23985728 DOI： 10.1038/nmeth.2606

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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10 in total

1. Automated electron-density sampling reveals widespread conformational polymorphism in proteins.

Authors: P Therese Lang; Ho-Leung Ng; James S Fraser; Jacob E Corn; Nathaniel Echols; Mark Sales; James M Holton; Tom Alber
Journal: Protein Sci Date: 2010-07 Impact factor: 6.725

2. Methods and software for diffuse X-ray scattering from protein crystals.

Authors: Michael E Wall
Journal: Methods Mol Biol Date: 2009

3. Catalysis by dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions.

Authors: Andrew J Adamczyk; Jie Cao; Shina C L Kamerlin; Arieh Warshel
Journal: Proc Natl Acad Sci U S A Date: 2011-08-10 Impact factor: 11.205

4. Accessing protein conformational ensembles using room-temperature X-ray crystallography.

Authors: James S Fraser; Henry van den Bedem; Avi J Samelson; P Therese Lang; James M Holton; Nathaniel Echols; Tom Alber
Journal: Proc Natl Acad Sci U S A Date: 2011-09-14 Impact factor: 11.205

5. Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease.

Authors: M E Wall; S E Ealick; S M Gruner
Journal: Proc Natl Acad Sci U S A Date: 1997-06-10 Impact factor: 11.205

6. A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis.

Authors: Gira Bhabha; Jeeyeon Lee; Damian C Ekiert; Jongsik Gam; Ian A Wilson; H Jane Dyson; Stephen J Benkovic; Peter E Wright
Journal: Science Date: 2011-04-08 Impact factor: 47.728

Review 7. Structure, dynamics, and catalytic function of dihydrofolate reductase.

Authors: Jason R Schnell; H Jane Dyson; Peter E Wright
Journal: Annu Rev Biophys Biomol Struct Date: 2004

8. Liquid-like movements in crystalline insulin.

Authors: D L Caspar; J Clarage; D M Salunke; M Clarage
Journal: Nature Date: 1988-04-14 Impact factor: 49.962

9. Hidden alternative structures of proline isomerase essential for catalysis.

Authors: James S Fraser; Michael W Clarkson; Sheena C Degnan; Renske Erion; Dorothee Kern; Tom Alber
Journal: Nature Date: 2009-12-03 Impact factor: 49.962

10. Automated identification of functional dynamic contact networks from X-ray crystallography.

Authors: Henry van den Bedem; Gira Bhabha; Kun Yang; Peter E Wright; James S Fraser
Journal: Nat Methods Date: 2013-08-04 Impact factor: 28.547

10 in total

7 in total

1. Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.

Authors: Michael E Wall; Andrew H Van Benschoten; Nicholas K Sauter; Paul D Adams; James S Fraser; Thomas C Terwilliger
Journal: Proc Natl Acad Sci U S A Date: 2014-12-01 Impact factor: 11.205

Visualizing networks of mobility in proteins.

1. Automated electron-density sampling reveals widespread conformational polymorphism in proteins.

2. Methods and software for diffuse X-ray scattering from protein crystals.

3. Catalysis by dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions.

4. Accessing protein conformational ensembles using room-temperature X-ray crystallography.

5. Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease.

6. A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis.

Review 7. Structure, dynamics, and catalytic function of dihydrofolate reductase.

8. Liquid-like movements in crystalline insulin.

9. Hidden alternative structures of proline isomerase essential for catalysis.

10. Automated identification of functional dynamic contact networks from X-ray crystallography.

1. Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.

Review 2. X-ray Scattering Studies of Protein Structural Dynamics.

3. Diffuse X-ray scattering to model protein motions.

4. Measuring and modeling diffuse scattering in protein X-ray crystallography.

5. Correlated Motions from Crystallography beyond Diffraction.

6. Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles.

7. Intermolecular correlations are necessary to explain diffuse scattering from protein crystals.