Literature DB >> 9154811

Cryptic signals and the fidelity of V(D)J joining.

S M Lewis1, E Agard, S Suh, L Czyzyk.   

Abstract

V(D)J recombination is responsible for the de novo creation of antigen receptor genes in T- and B-cell precursors. To the extent that lymphopoiesis takes place throughout an animal's lifetime, recombination errors present an ongoing problem. One type of aberrant rearrangement ensues when DNA sequences resembling a V(D)J joining signal are targeted by mistake. This study investigates the type of sequence likely to be subject to mistargeting, the level of joining-signal function associated with these sequences, and the number of such cryptic joining signals in the genome.

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Year:  1997        PMID: 9154811      PMCID: PMC232165          DOI: 10.1128/MCB.17.6.3125

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  73 in total

1.  V(D)J recombination activity in lymphoid cell lines is increased by agents that elevate cAMP.

Authors:  J P Menetski; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1990-12       Impact factor: 11.205

2.  Genetic evidence that the RAG1 protein directly participates in V(D)J recombination through substrate recognition.

Authors:  C A Roman; D Baltimore
Journal:  Proc Natl Acad Sci U S A       Date:  1996-03-19       Impact factor: 11.205

3.  Distinct DNA sequence and structure requirements for the two steps of V(D)J recombination signal cleavage.

Authors:  D A Ramsden; J F McBlane; D C van Gent; M Gellert
Journal:  EMBO J       Date:  1996-06-17       Impact factor: 11.598

4.  Frequent aberrant immunoglobulin gene rearrangements in pro-B cells revealed by a bcl-xL transgene.

Authors:  W Fang; D L Mueller; C A Pennell; J J Rivard; Y S Li; R R Hardy; M S Schlissel; T W Behrens
Journal:  Immunity       Date:  1996-03       Impact factor: 31.745

5.  Immunoglobulin heavy chain gene replacement: a mechanism of receptor editing.

Authors:  C Chen; Z Nagy; E L Prak; M Weigert
Journal:  Immunity       Date:  1995-12       Impact factor: 31.745

6.  The RAG1 and RAG2 proteins establish the 12/23 rule in V(D)J recombination.

Authors:  D C van Gent; D A Ramsden; M Gellert
Journal:  Cell       Date:  1996-04-05       Impact factor: 41.582

7.  V-D-J rearrangements at the T cell receptor delta locus in mouse thymocytes of the alpha beta lineage.

Authors:  P B Nakajima; J P Menetski; D B Roth; M Gellert; M J Bosma
Journal:  Immunity       Date:  1995-11       Impact factor: 31.745

8.  rag-1 and rag-2 are components of a high-molecular-weight complex, and association of rag-2 with this complex is rag-1 dependent.

Authors:  T M Leu; D G Schatz
Journal:  Mol Cell Biol       Date:  1995-10       Impact factor: 4.272

9.  B cells are generated throughout life in humans.

Authors:  C Nuñez; N Nishimoto; G L Gartland; L G Billips; P D Burrows; H Kubagawa; M D Cooper
Journal:  J Immunol       Date:  1996-01-15       Impact factor: 5.422

10.  RAG-1 mutations that affect the target specificity of V(D)j recombination: a possible direct role of RAG-1 in site recognition.

Authors:  M J Sadofsky; J E Hesse; D C van Gent; M Gellert
Journal:  Genes Dev       Date:  1995-09-01       Impact factor: 11.361

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  57 in total

1.  Functional characterization of B lymphocytes generated in vitro from embryonic stem cells.

Authors:  S K Cho; T D Webber; J R Carlyle; T Nakano; S M Lewis; J C Zúñiga-Pflücker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

Review 2.  The RAG proteins in V(D)J recombination: more than just a nuclease.

Authors:  M J Sadofsky
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

3.  Postcleavage sequence specificity in V(D)J recombination.

Authors:  E A Agard; S M Lewis
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

4.  Mechanistic basis for RAG discrimination between recombination sites and the off-target sites of human lymphomas.

Authors:  Noriko Shimazaki; Amjad Askary; Patrick C Swanson; Michael R Lieber
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

5.  Mechanism of fragility at BCL2 gene minor breakpoint cluster region during t(14;18) chromosomal translocation.

Authors:  Mridula Nambiar; Sathees C Raghavan
Journal:  J Biol Chem       Date:  2012-01-24       Impact factor: 5.157

6.  RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2.

Authors:  Yaakov Maman; Grace Teng; Rashu Seth; Steven H Kleinstein; David G Schatz
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 7.  Role of recombination activating genes in the generation of antigen receptor diversity and beyond.

Authors:  Mayilaadumveettil Nishana; Sathees C Raghavan
Journal:  Immunology       Date:  2012-12       Impact factor: 7.397

8.  Regulation of V(D)J recombination by nucleosome positioning at recombination signal sequences.

Authors:  Matthias Baumann; Adamantios Mamais; Fraser McBlane; Hua Xiao; Joan Boyes
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

9.  Prospective estimation of recombination signal efficiency and identification of functional cryptic signals in the genome by statistical modeling.

Authors:  Lindsay G Cowell; Marco Davila; Kaiyong Yang; Thomas B Kepler; Garnett Kelsoe
Journal:  J Exp Med       Date:  2003-01-20       Impact factor: 14.307

Review 10.  Nonhomologous DNA end joining (NHEJ) and chromosomal translocations in humans.

Authors:  Michael R Lieber; Jiafeng Gu; Haihui Lu; Noriko Shimazaki; Albert G Tsai
Journal:  Subcell Biochem       Date:  2010
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