Literature DB >> 9017215

Theoretical study of the electrostatic and steric effects on the spectroscopic characteristics of the metal-ligand unit of heme proteins. 2. C-O vibrational frequencies, 17O isotropic chemical shifts, and nuclear quadrupole coupling constants.

B Kushkuley1, S S Stavrov.   

Abstract

The quantum chemical calculations, vibronic theory of activation, and London-Pople approach are used to study the dependence of the C-O vibrational frequency, 17O isotropic chemical shift, and nuclear quadrupole coupling constant on the distortion of the porphyrin ring and geometry of the CO coordination, changes in the iron-carbon and iron-imidazole distances, magnitude of the iron displacement out of the porphyrin plane, and presence of the charged groups in the heme environment. It is shown that only the electrostatic interactions can cause the variation of all these parameters experimentally observed in different heme proteins, and the heme distortions could modulate this variation. The correlations between the theoretically calculated parameters are shown to be close to the experimentally observed ones. The study of the effect of the electric field of the distal histidine shows that the presence of the four C-O vibrational bands in the infrared absorption spectra of the carbon monoxide complexes of different myoglobins and hemoglobins can be caused by the different orientations of the different tautomeric forms of the distal histidine. The dependence of the 17O isotropic chemical shift and nuclear quadrupole coupling constant on pH and the distal histidine substitution can be also explained from the same point of view.

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Year:  1997        PMID: 9017215      PMCID: PMC1185613          DOI: 10.1016/s0006-3495(97)78724-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

1.  Reactivity of ferrous myoglobin at low pH.

Authors:  G M Giacometti; T G Traylor; P Ascenzi; M Brunori; E Antonini
Journal:  J Biol Chem       Date:  1977-11-10       Impact factor: 5.157

Review 2.  Cytochrome P450 and biological hydroxylation reactions.

Authors:  V Ullrich
Journal:  Top Curr Chem       Date:  1979

3.  A test of the role of electrostatic interactions in determining the CO stretch frequency in carbonmonoxymyoglobin.

Authors:  S M Decatur; S G Boxer
Journal:  Biochem Biophys Res Commun       Date:  1995-07-06       Impact factor: 3.575

4.  Reactivity of ferrous heme proteins at low pH.

Authors:  T G Traylor; L A Deardurff; M Coletta; P Ascenzi; E Antonini; M Brunori
Journal:  J Biol Chem       Date:  1983-10-25       Impact factor: 5.157

5.  A consistent picture of protein dynamics.

Authors:  F Parak; E W Knapp
Journal:  Proc Natl Acad Sci U S A       Date:  1984-11       Impact factor: 11.205

6.  CO and O2 complexes of soybean leghemoglobins: pH effects upon infrared and visible spectra. Comparisons with CO and O2 complexes of myoglobin and hemoglobin.

Authors:  W H Fuchsman; C A Appleby
Journal:  Biochemistry       Date:  1979-04-03       Impact factor: 3.162

7.  Electron spin echo envelope modulation study of oxygenated iron-cobalt hybrid hemoglobins reveals molecular features analogous to those of the oxy ferrous protein.

Authors:  H C Lee; J Peisach; A Tsuneshige; T Yonetani
Journal:  Biochemistry       Date:  1995-05-23       Impact factor: 3.162

8.  Theoretical study of model compound I complexes of horseradish peroxidase and catalase.

Authors:  P Du; G H Loew
Journal:  Biophys J       Date:  1995-01       Impact factor: 4.033

9.  Kinetics of carbon monoxide binding to monomeric hemoproteins. Role of the proximal histidine.

Authors:  M Coletta; P Ascenzi; T G Traylor; M Brunori
Journal:  J Biol Chem       Date:  1985-04-10       Impact factor: 5.157

10.  Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O.

Authors:  M Lim; T A Jackson; P A Anfinrud
Journal:  Science       Date:  1995-08-18       Impact factor: 47.728

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  12 in total

1.  Influence of static and dynamic disorder on the visible and infrared absorption spectra of carbonmonoxy horseradish peroxidase.

Authors:  A D Kaposi; J M Vanderkooi; W W Wright; J Fidy; S S Stavrov
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Influence of the heme pocket conformation on the structure and vibrations of the Fe-CO bond in myoglobin: a QM/MM density functional study.

Authors:  C Rovira; B Schulze; M Eichinger; J D Evanseck; M Parrinello
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

3.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  Probing electric fields in protein cavities by using the vibrational stark effect of carbon monoxide.

Authors:  Hartwig Lehle; Jan M Kriegl; Karin Nienhaus; Pengchi Deng; Stephanus Fengler; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

5.  Infrared absorption study of the heme pocket dynamics of carbonmonoxyheme proteins.

Authors:  Andras D Kaposi; Jane M Vanderkooi; Solomon S Stavrov
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

6.  Connection between the taxonomic substates and protonation of histidines 64 and 97 in carbonmonoxy myoglobin.

Authors:  J D Müller; B H McMahon; E Y Chien; S G Sligar; G U Nienhaus
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

7.  Oligomerization and ligand binding in a homotetrameric hemoglobin: two high-resolution crystal structures of hemoglobin Bart's (gamma(4)), a marker for alpha-thalassemia.

Authors:  R D Kidd; H M Baker; A J Mathews; T Brittain; E N Baker
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

8.  Dynamics of a myoglobin mutant enzyme: 2D IR vibrational echo experiments and simulations.

Authors:  Sayan Bagchi; Benjamin T Nebgen; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2010-12-08       Impact factor: 15.419

9.  Crystal structures of myoglobin-ligand complexes at near-atomic resolution.

Authors:  J Vojtechovský; K Chu; J Berendzen; R M Sweet; I Schlichting
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

10.  An engineered heme-copper center in myoglobin: CO migration and binding.

Authors:  Karin Nienhaus; John S Olson; G Ulrich Nienhaus
Journal:  Biochim Biophys Acta       Date:  2013-02-28
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