Literature DB >> 15596507

Probing electric fields in protein cavities by using the vibrational stark effect of carbon monoxide.

Hartwig Lehle1, Jan M Kriegl, Karin Nienhaus, Pengchi Deng, Stephanus Fengler, G Ulrich Nienhaus.   

Abstract

To determine the magnitude and direction of the internal electric field in the Xe4 cavity of myoglobin mutant L29W-S108L, we have studied the vibrational Stark effect of carbon monoxide (CO) using infrared spectroscopy at cryogenic temperatures. CO was photodissociated from the heme iron and deposited selectively in Xe4. Its infrared spectrum exhibits Stark splitting into two bands associated with CO in opposite orientations. Two different photoproduct states can be distinguished, C' and C'', with markedly different properties. For C', characteristic temperature-dependent changes of the area, shift, and width were analyzed, based on a dynamic model in which the CO performs fast librations within a double-well model potential. For the barrier between the wells, a height of approximately 1.8 kJ/mol was obtained, in which the CO performs oscillations at an angular frequency of approximately 25 cm(-1). The magnitude of the electric field in the C' conformation was determined as 11.1 MV/cm; it is tilted by an angle of 29 degrees to the symmetry axis of the potential. Above 140 K, a protein relaxation leads to a significantly altered photoproduct, C'', with a smaller Stark splitting and a more confining potential (barrier >4 kJ/mol) governing the CO librations.

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Year:  2004        PMID: 15596507      PMCID: PMC1305250          DOI: 10.1529/biophysj.104.048140

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Electrostatic contributions to protein-protein interactions: fast energetic filters for docking and their physical basis.

Authors:  R Norel; F Sheinerman; D Petrey; B Honig
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

2.  A sphere-based model for the electrostatics of globular proteins.

Authors:  Philipp Werner; Amedeo Caflisch
Journal:  J Am Chem Soc       Date:  2003-04-16       Impact factor: 15.419

Review 3.  The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology.

Authors:  F Fogolari; A Brigo; H Molinari
Journal:  J Mol Recognit       Date:  2002 Nov-Dec       Impact factor: 2.137

4.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

5.  Internal stark effect measurement of the electric field at the amino terminus of an alpha helix.

Authors:  D J Lockhart; P S Kim
Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

6.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

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Authors:  B H Honig; W L Hubbell; R F Flewelling
Journal:  Annu Rev Biophys Biophys Chem       Date:  1986

8.  Calculation of electrostatic effects at the amino terminus of an alpha helix.

Authors:  D Sitkoff; D J Lockhart; K A Sharp; B Honig
Journal:  Biophys J       Date:  1994-12       Impact factor: 4.033

Review 9.  Stark spectroscopy: applications in chemistry, biology, and materials science.

Authors:  G U Bublitz; S G Boxer
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

10.  Conformational substates and motions in myoglobin. External influences on structure and dynamics.

Authors:  M K Hong; D Braunstein; B R Cowen; H Frauenfelder; I E Iben; J R Mourant; P Ormos; R Scholl; A Schulte; P J Steinbach
Journal:  Biophys J       Date:  1990-08       Impact factor: 4.033

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  11 in total

1.  Transient ligand docking sites in Cerebratulus lacteus mini-hemoglobin.

Authors:  Pengchi Deng; Karin Nienhaus; Pasquale Palladino; John S Olson; George Blouin; Luc Moens; Sylvia Dewilde; Eva Geuens; G Ulrich Nienhaus
Journal:  Gene       Date:  2007-04-29       Impact factor: 3.688

2.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

3.  Stigmatellin probes the electrostatic potential in the QB site of the photosynthetic reaction center.

Authors:  László Gerencsér; Bogáta Boros; Valerie Derrien; Deborah K Hanson; Colin A Wraight; Pierre Sebban; Péter Maróti
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

4.  Influence of distal residue B10 on CO dynamics in myoglobin and neuroglobin.

Authors:  Karin Nienhaus; G Ulrich Nienhaus
Journal:  J Biol Phys       Date:  2008-04-05       Impact factor: 1.365

5.  Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential.

Authors:  Chérif F Matta
Journal:  J Comput Chem       Date:  2014-04-29       Impact factor: 3.376

6.  Vibrational stark effect probes for nucleic acids.

Authors:  Lisa N Silverman; Michael E Pitzer; Peter O Ankomah; Steven G Boxer; Edward E Fenlon
Journal:  J Phys Chem B       Date:  2007-09-18       Impact factor: 2.991

7.  Docking and migration of carbon monoxide in nitrogenase: the case for gated pockets from infrared spectroscopy and molecular dynamics.

Authors:  Leland B Gee; Igor Leontyev; Alexei Stuchebrukhov; Aubrey D Scott; Vladimir Pelmenschikov; Stephen P Cramer
Journal:  Biochemistry       Date:  2015-05-15       Impact factor: 3.162

8.  An engineered heme-copper center in myoglobin: CO migration and binding.

Authors:  Karin Nienhaus; John S Olson; G Ulrich Nienhaus
Journal:  Biochim Biophys Acta       Date:  2013-02-28

9.  Ligand and substrate migration in human indoleamine 2,3-dioxygenase.

Authors:  Elena Nickel; Karin Nienhaus; Changyuan Lu; Syun-Ru Yeh; G Ulrich Nienhaus
Journal:  J Biol Chem       Date:  2009-09-20       Impact factor: 5.157

10.  Fourier transform infrared spectroscopy study of ligand photodissociation and migration in inducible nitric oxide synthase.

Authors:  Michael Horn; Karin Nienhaus; Gerd Ulrich Nienhaus
Journal:  F1000Res       Date:  2014-11-28
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