Literature DB >> 9016516

Database on the structure of small ribosomal subunit RNA.

Y Van de Peer1, J Jansen, P De Rijk, R De Wachter.   

Abstract

The Antwerp database on small ribosomal subunit RNA now offers more than 6000 nucleotide sequences (August 1996). All these sequences are stored in the form of an alignment based on the adopted secondary structure model, which is corroborated by the observation of compensating substitutions in the alignment. Besides the primary and secondary structure information, literature references, accession numbers and detailed taxonomic information are also compiled. For ease of use, the complete database is made available to the scientific community via World Wide Web at URL http://rrna.uia.ac.be/ssu/ .

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Year:  1997        PMID： 9016516      PMCID： PMC146374          DOI： 10.1093/nar/25.1.111

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  22 in total

1.  Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.

Authors:  R R Gutell
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

2.  A quantitative map of nucleotide substitution rates in bacterial rRNA.

Authors:  Y Van de Peer; S Chapelle; R De Wachter
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

3.  The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA.

Authors:  Y Van de Peer; G Van der Auwera; R De Wachter
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

4.  Compilation of small ribosomal subunit RNA sequences.

Authors:  E Huysmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  1986       Impact factor: 16.971

Review 5.  The winds of (evolutionary) change: breathing new life into microbiology.

Authors:  G J Olsen; C R Woese; R Overbeek
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

Review 6.  Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

Authors:  R R Gutell; N Larsen; C R Woese
Journal:  Microbiol Rev       Date:  1994-03

7.  GenBank.

Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

8.  Database on the structure of small ribosomal subunit RNA.

Authors:  Y Van de Peer; S Nicolaï; P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

9.  The European Bioinformatics Institute (EBI) databases.

Authors:  P Rodriguez-Tomé; P J Stoehr; G N Cameron; T P Flores
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

10.  Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs.

Authors:  L Nelles; B L Fang; G Volckaert; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1984-12-11       Impact factor: 16.971
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  27 in total

1.  The European small subunit ribosomal RNA database.

Authors:  Y Van de Peer; P De Rijk; J Wuyts; T Winkelmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis.

Authors:  M G Höfle; H Haas; K Dominik
Journal:  Appl Environ Microbiol       Date:  1999-07       Impact factor: 4.792

Review 3.  Developments in fungal taxonomy.

Authors:  J Guarro; A M Stchigel
Journal:  Clin Microbiol Rev       Date:  1999-07       Impact factor: 26.132

4.  Diversity of Holocene life forms in fossil glacier ice.

Authors:  E Willerslev; A J Hansen; B Christensen; J P Steffensen; P Arctander
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

5.  Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

Authors:  J Wuyts; P De Rijk; Y Van de Peer; G Pison; P Rousseeuw; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

6.  Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil.

Authors:  K J Chin; T Lukow; R Conrad
Journal:  Appl Environ Microbiol       Date:  1999-06       Impact factor: 4.792

7.  Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18s rDNA.

Authors:  G A Kowalchuk; S Gerards; J W Woldendorp
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

8.  Predicted secondary structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation.

Authors:  Joseph J Gillespie; Matthew J Yoder; Robert A Wharton
Journal:  J Mol Evol       Date:  2005-07-14       Impact factor: 2.395

9.  Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data.

Authors:  Austen R D Ganley; Takehiko Kobayashi
Journal:  Genome Res       Date:  2007-01-02       Impact factor: 9.043

10.  Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing.

Authors:  Stephen A James; Michael J T O'Kelly; David M Carter; Robert P Davey; Alexander van Oudenaarden; Ian N Roberts
Journal:  Genome Res       Date:  2009-01-13       Impact factor: 9.043
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