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Literature DB >> 7524024

Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.

Abstract

A collection of diverse 16S and 16S-like rRNA secondary structure diagrams are available. This set of rRNAs contains representative structures from all of the major phylogenetic groupings--Archaea, (eu)Bacteria, and the nucleus, mitochondrion, and chloroplast of Eucarya. Within this broad phylogenetic sampling are examples of the major forms of structural diversity currently known for this class of rRNAs. These structure diagrams are available online through our computer-network WWW server and anonymous ftp, as well as from the author in hardcopy format.

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Year: 1994 PMID： 7524024 PMCID： PMC308311 DOI： 10.1093/nar/22.17.3502

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

6 in total

1. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.

Authors: R R Gutell; A Power; G Z Hertz; E J Putz; G D Stormo
Journal: Nucleic Acids Res Date: 1992-11-11 Impact factor: 16.971

2. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

Authors: C R Woese; O Kandler; M L Wheelis
Journal: Proc Natl Acad Sci U S A Date: 1990-06 Impact factor: 11.205

3. Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA.

Authors: P H Boer; M W Gray
Journal: Cell Date: 1988-11-04 Impact factor: 41.582

Review 4. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

Authors: R R Gutell; N Larsen; C R Woese
Journal: Microbiol Rev Date: 1994-03

5. The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi.

Authors: G Hinkle; D D Leipe; T A Nerad; M L Sogin
Journal: Nucleic Acids Res Date: 1994-02-11 Impact factor: 16.971

6. Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium.

Authors: R Gupta; J M Lanter; C R Woese
Journal: Science Date: 1983-08-12 Impact factor: 47.728

6 in total

108 in total

1. The RDP (Ribosomal Database Project) continues.

Authors: B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; J M Stredwick; G M Garrity; B Li; G J Olsen; S Pramanik; T M Schmidt; J M Tiedje
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. The European small subunit ribosomal RNA database.

Authors: Y Van de Peer; P De Rijk; J Wuyts; T Winkelmans; R De Wachter
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

3. The yeast retrotransposon Ty5 uses the anticodon stem-loop of the initiator methionine tRNA as a primer for reverse transcription.

Authors: N Ke; X Gao; J B Keeney; J D Boeke; D F Voytas
Journal: RNA Date: 1999-07 Impact factor: 4.942

4. A test of the model to predict unusually stable RNA hairpin loop stability.

Authors: T Dale; R Smith; M J Serra
Journal: RNA Date: 2000-04 Impact factor: 4.942

5. Arrangement of the central pseudoknot region of 16S rRNA in the 30S ribosomal subunit determined by site-directed 4-thiouridine crosslinking.

Authors: D I Juzumiene; P Wollenzien
Journal: RNA Date: 2001-01 Impact factor: 4.942

6. Intraspecific diversity of the 23S rRNA gene and the spacer region downstream in Escherichia coli.

Authors: A I Antón; A J Martínez-Murcia; F Rodríguez-Valera
Journal: J Bacteriol Date: 1999-05 Impact factor: 3.490

7. Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude oil storage cavities.

Authors: K Watanabe; K Watanabe; Y Kodama; K Syutsubo; S Harayama
Journal: Appl Environ Microbiol Date: 2000-11 Impact factor: 4.792

8. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

Authors: J Wuyts; Y Van de Peer; R De Wachter
Journal: Nucleic Acids Res Date: 2001-12-15 Impact factor: 16.971

9. Novel cross-strand three-purine stack of the highly conserved 5'-GA/AAG-5' internal loop at the 3'-end termini of Parvovirus genomes.

Authors: S H Chou; K H Chin
Journal: J Biomol NMR Date: 2001-12 Impact factor: 2.835

10. Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.

Authors: Martin J Serra; John D Baird; Taraka Dale; Bridget L Fey; Kimberly Retatagos; Eric Westhof
Journal: RNA Date: 2002-03 Impact factor: 4.942