Literature DB >> 10592217

The European small subunit ribosomal RNA database.

Y Van de Peer1, P De Rijk, J Wuyts, T Winkelmans, R De Wachter.   

Abstract

The European database of the Small Subunit (SSU) Ribosomal RNA is a curated database that strives to collect all information about the primary and secondary structure of completely or nearly-completely sequenced rRNAs. Furthermore, the database compiles additional information such as literature references and taxonomic status of the organism the sequence was derived from. The database can be consulted via the WWW at URL http://rrna.uia.ac.be/ssu/. Through the WWW, sequences can be easily selected either one by one, by taxonomic group, or by a combination of both, and can be retrieved in different sequence and alignment formats.

Mesh：

Substances：

Year:  2000        PMID： 10592217      PMCID： PMC102429          DOI： 10.1093/nar/28.1.175

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  9 in total

1.  Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.

Authors:  R R Gutell
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

2.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  Database on the structure of small subunit ribosomal RNA.

Authors:  Y Van de Peer; E Robbrecht; S de Hoog; A Caers; P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  The EMBL Nucleotide Sequence Database.

Authors:  G Stoesser; M A Tuli; R Lopez; P Sterk
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

5.  Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA.

Authors:  Y Van de Peer; R De Wachter
Journal:  J Mol Evol       Date:  1997-12       Impact factor: 2.395

6.  Database on the structure of small ribosomal subunit RNA.

Authors:  Y Van de Peer; J Jansen; P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

Review 7.  Ribosomal RNA: a key to phylogeny.

Authors:  G J Olsen; C R Woese
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

Review 8.  Tempo, mode, the progenote, and the universal root.

Authors:  W F Doolittle; J R Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

9.  Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis.

Authors:  W E Tapprich; D J Goss; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205
  9 in total
  35 in total

1.  ICB database: the gyrB database for identification and classification of bacteria.

Authors:  K Watanabe; J Nelson; S Harayama; H Kasai
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

Authors:  J Wuyts; P De Rijk; Y Van de Peer; G Pison; P Rousseeuw; R De Wachter
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

3.  Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching.

Authors:  R D Page
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

4.  Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.

Authors:  J Wuyts; Y Van de Peer; R De Wachter
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

5.  The European database on small subunit ribosomal RNA.

Authors:  Jan Wuyts; Yves Van de Peer; Tina Winkelmans; Rupert De Wachter
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Discovering common stem-loop motifs in unaligned RNA sequences.

Authors:  J Gorodkin; S L Stricklin; G D Stormo
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

7.  A plant virus replication system to assay the formation of RNA pseudotriloop motifs in RNA-protein interactions.

Authors:  P C Joost Haasnoot; John F Bol; René C L Olsthoorn
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

8.  Design and evaluation of PCR primers for analysis of bacterial populations in wine by denaturing gradient gel electrophoresis.

Authors:  Isabel Lopez; Fernanda Ruiz-Larrea; Luca Cocolin; Erica Orr; Trevor Phister; Megan Marshall; Jean VanderGheynst; David A Mills
Journal:  Appl Environ Microbiol       Date:  2003-11       Impact factor: 4.792

9.  Structural rRNA characters support monophyly of raptorial limbs and paraphyly of limb specialization in water fleas.

Authors:  Timothy D Swain; Derek J Taylor
Journal:  Proc Biol Sci       Date:  2003-05-07       Impact factor: 5.349

10.  Prediction of consensus structural motifs in a family of coregulated RNA sequences.

Authors:  Yuh-Jyh Hu
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.