Literature DB >> 8594609

Database on the structure of small ribosomal subunit RNA.

Y Van de Peer1, S Nicolaï, P De Rijk, R De Wachter.   

Abstract

The Antwerp database on small ribosomal subunit RNA offers over 4300 nucleotide sequences (August 1995). All these sequences are stored in the form of an alignment based on the adopted secondary structure model, which in turn is corroborated by the observation of compensating substitutions in the alignment. Besides the primary and secondary structure information, literature references, accession numbers and detailed taxonomic information are also compiled. The complete database is made available to the scientific community through anonymous ftp and World Wide Web(WWW).

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Year:  1996        PMID： 8594609      PMCID： PMC145606          DOI： 10.1093/nar/24.1.86

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  Compilation of small ribosomal subunit RNA sequences.

Authors:  J M Neefs; Y Van de Peer; L Hendriks; R De Wachter
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

Review 2.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

3.  Database on the structure of small ribosomal subunit RNA.

Authors:  Y Van de Peer; I Van den Broeck; P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

4.  A proposal for the secondary structure of a variable area of eukaryotic small ribosomal subunit RNA involving the existence of a pseudoknot.

Authors:  J M Neefs; R De Wachter
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

5.  Compilation of small ribosomal subunit RNA sequences.

Authors:  E Huysmans; R De Wachter
Journal:  Nucleic Acids Res       Date:  1986       Impact factor: 16.971

6.  Compilation of small ribosomal subunit RNA sequences.

Authors:  E Dams; L Hendriks; Y Van de Peer; J M Neefs; G Smits; I Vandenbempt; R De Wachter
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  The European Bioinformatics Institute (EBI) databases.

Authors:  D B Emmert; P J Stoehr; G Stoesser; G N Cameron
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

9.  Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs.

Authors:  L Nelles; B L Fang; G Volckaert; A Vandenberghe; R De Wachter
Journal:  Nucleic Acids Res       Date:  1984-12-11       Impact factor: 16.971

10.  The Ribosomal Database Project (RDP).

Authors:  B L Maidak; G J Olsen; N Larsen; R Overbeek; M J McCaughey; C R Woese
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971
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  26 in total

1.  Detection of Verrucomicrobia in a pasture soil by PCR-mediated amplification of 16S rRNA genes.

Authors:  K A O'Farrell; P H Janssen
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

2.  16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates.

Authors:  M Drancourt; C Bollet; A Carlioz; R Martelin; J P Gayral; D Raoult
Journal:  J Clin Microbiol       Date:  2000-10       Impact factor: 5.948

3.  A quantitative map of nucleotide substitution rates in bacterial rRNA.

Authors:  Y Van de Peer; S Chapelle; R De Wachter
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

4.  Database on the structure of small ribosomal subunit RNA.

Authors:  Y Van de Peer; A Caers; P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

5.  Complete large subunit ribosomal RNA sequences from the heterokont algae Ochromonas danica, Nannochloropsis salina, and Tribonema aequale, and phylogenetic analysis.

Authors:  G Van der Auwera; R De Wachter
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

6.  Variable region V1 of Saccharomyces cerevisiae 18S rRNA participates in biogenesis and function of the small ribosomal subunit.

Authors:  R W van Nues; J Venema; R J Planta; H A Raué
Journal:  Chromosoma       Date:  1997-06       Impact factor: 4.316

Review 7.  Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses.

Authors:  H M Davey; D B Kell
Journal:  Microbiol Rev       Date:  1996-12

8.  Database on the structure of small ribosomal subunit RNA.

Authors:  Y Van de Peer; J Jansen; P De Rijk; R De Wachter
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

9.  Novel molecular method for identification of Streptococcus pneumoniae applicable to clinical microbiology and 16S rRNA sequence-based microbiome studies.

Authors:  Christian F P Scholz; Knud Poulsen; Mogens Kilian
Journal:  J Clin Microbiol       Date:  2012-03-21       Impact factor: 5.948

10.  Intraspecific variation of unusual phospholipids from Corynebacterium spp. containing a novel fatty acid.

Authors:  T Niepel; H Meyer; V Wray; W R Abraham
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490
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