Literature DB >> 9016499

The SWISS-PROT protein sequence data bank and its supplement TrEMBL.

A Bairoch1, R Apweiler.   

Abstract

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotations (such as the description of the function of a protein, structure of its domains, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include: an increase in the number and scope of model organisms; cross-references to two additional databases; a variety of new documentation files and the creation of TrEMBL, a computer annotated supplement to SWISS-PROT. This supplement consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except the CDS already included in SWISS-PROT.

Mesh:

Year:  1997        PMID: 9016499      PMCID: PMC146382          DOI: 10.1093/nar/25.1.31

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  The SWISS-PROT protein sequence data bank and its new supplement TREMBL.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

2.  The ENZYME data bank in 1995.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

3.  The PROSITE database, its status in 1995.

Authors:  A Bairoch; P Bucher; K Hofmann
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

4.  The European Bioinformatics Institute (EBI) databases.

Authors:  P Rodriguez-Tomé; P J Stoehr; G N Cameron; T P Flores
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

5.  The human myocardial two-dimensional gel protein database: update 1994.

Authors:  J M Corbett; C H Wheeler; C S Baker; M H Yacoub; M J Dunn
Journal:  Electrophoresis       Date:  1994-11       Impact factor: 3.535

6.  A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors:  R D Appel; A Bairoch; D F Hochstrasser
Journal:  Trends Biochem Sci       Date:  1994-06       Impact factor: 13.807

  6 in total
  57 in total

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Authors:  R O Chen; R B Altman
Journal:  J Am Med Inform Assoc       Date:  1999 Sep-Oct       Impact factor: 4.497

2.  Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning.

Authors:  G Elgar; M S Clark; S Meek; S Smith; S Warner; Y J Edwards; N Bouchireb; A Cottage; G S Yeo; Y Umrania; G Williams; S Brenner
Journal:  Genome Res       Date:  1999-10       Impact factor: 9.043

3.  The net charge of the first 18 residues of the mature sequence affects protein translocation across the cytoplasmic membrane of gram-negative bacteria.

Authors:  A V Kajava; S N Zolov; A E Kalinin; M A Nesmeyanova
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

4.  Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses.

Authors:  V S Reddy; P Natarajan; B Okerberg; K Li; K V Damodaran; R T Morton; C L Brooks; J E Johnson
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

5.  Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q.

Authors:  Sarah F Smith; Philip Snell; Frank Gruetzner; Anthony J Bench; Thomas Haaf; Judith A Metcalfe; Anthony R Green; Greg Elgar
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

6.  Gene survey of the pathogenic protozoan Trypanosoma cruzi.

Authors:  B M Porcel; A N Tran; M Tammi; Z Nyarady; M Rydâker; T P Urmenyi; E Rondinelli; U Pettersson; B Andersson; L Aslund
Journal:  Genome Res       Date:  2000-08       Impact factor: 9.043

7.  Competition between Sec- and TAT-dependent protein translocation in Escherichia coli.

Authors:  S Cristóbal; J W de Gier; H Nielsen; G von Heijne
Journal:  EMBO J       Date:  1999-06-01       Impact factor: 11.598

8.  Folding free energy function selects native-like protein sequences in the core but not on the surface.

Authors:  Alfonso Jaramillo; Lorenz Wernisch; Stéphanie Héry; Shoshana J Wodak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-04       Impact factor: 11.205

9.  Rationally selected basis proteins: a new approach to selecting proteins for spectroscopic secondary structure analysis.

Authors:  Keith A Oberg; Jean-Marie Ruysschaert; Erik Goormaghtigh
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

10.  A computational modeling and molecular dynamics study of the Michaelis complex of human protein Z-dependent protease inhibitor (ZPI) and factor Xa (FXa).

Authors:  Vasudevan Chandrasekaran; Chang Jun Lee; Ping Lin; Robert E Duke; Lee G Pedersen
Journal:  J Mol Model       Date:  2009-01-27       Impact factor: 1.810

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