Literature DB >> 11711584

Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses.

V S Reddy1, P Natarajan, B Okerberg, K Li, K V Damodaran, R T Morton, C L Brooks, J E Johnson.   

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Year:  2001        PMID： 11711584      PMCID： PMC116089          DOI： 10.1128/JVI.75.24.11943-11947.2001

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


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  8 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Calculation of the free energy of association for protein complexes.

Authors:  N Horton; M Lewis
Journal:  Protein Sci       Date:  1992-01       Impact factor: 6.725

3.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

4.  Raster3D: photorealistic molecular graphics.

Authors:  E A Merritt; D J Bacon
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Energetics of quasiequivalence: computational analysis of protein-protein interactions in icosahedral viruses.

Authors:  V S Reddy; H A Giesing; R T Morton; A Kumar; C B Post; C L Brooks; J E Johnson
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

6.  The SWISS-PROT protein sequence data bank and its supplement TrEMBL.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

7.  Solvation energy in protein folding and binding.

Authors:  D Eisenberg; A D McLachlan
Journal:  Nature       Date:  1986 Jan 16-22       Impact factor: 49.962

8.  Molecular packing in virus crystals: geometry, chemistry, and biology.

Authors:  P Natarajan; J E Johnson
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867
  8 in total
  54 in total

1.  Mechanics of DNA packaging in viruses.

Authors:  Prashant K Purohit; Jané Kondev; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

2.  Determination of viral capsid elastic properties from equilibrium thermal fluctuations.

Authors:  Eric R May; Charles L Brooks
Journal:  Phys Rev Lett       Date:  2011-05-02       Impact factor: 9.161

3.  Competing hydrophobic and screened-coulomb interactions in hepatitis B virus capsid assembly.

Authors:  Willem K Kegel; Paul van der Schoot Pv
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

4.  Role of interfacial amino acid residues in assembly, stability, and conformation of a spherical virus capsid.

Authors:  Juan Reguera; Aura Carreira; Laura Riolobos; José María Almendral; Mauricio G Mateu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

5.  Mechanics of bacteriophage maturation.

Authors:  Wouter H Roos; Ilya Gertsman; Eric R May; Charles L Brooks; John E Johnson; Gijs J L Wuite
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

6.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

7.  Origin of icosahedral symmetry in viruses.

Authors:  Roya Zandi; David Reguera; Robijn F Bruinsma; William M Gelbart; Joseph Rudnick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-14       Impact factor: 11.205

8.  Evolutionary trace residues in noroviruses: importance in receptor binding, antigenicity, virion assembly, and strain diversity.

Authors:  Sugoto Chakravarty; Anne M Hutson; Mary K Estes; B V Venkataram Prasad
Journal:  J Virol       Date:  2005-01       Impact factor: 5.103

9.  Mechanisms of size control and polymorphism in viral capsid assembly.

Authors:  Oren M Elrad; Michael F Hagan
Journal:  Nano Lett       Date:  2008-10-25       Impact factor: 11.189

10.  Structural determinants of tissue tropism and in vivo pathogenicity for the parvovirus minute virus of mice.

Authors:  Maria Kontou; Lakshmanan Govindasamy; Hyun-Joo Nam; Nathan Bryant; Antonio L Llamas-Saiz; Concepción Foces-Foces; Eva Hernando; Mari-Paz Rubio; Robert McKenna; José M Almendral; Mavis Agbandje-McKenna
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103
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