Literature DB >> 8594577

The PROSITE database, its status in 1995.

A Bairoch1, P Bucher, K Hofmann.   

Abstract

The PROSITE database consists of biologically significant patterns and profiles formulated in such a way that with appropriate computational tools it can help to determine to which known family of proteins (if any) a new sequence belongs or which known domain(s) it contains.

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Substances：

Year:  1996        PMID： 8594577      PMCID： PMC145570          DOI： 10.1093/nar/24.1.189

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

1.  Construction of a dictionary of sequence motifs that characterize groups of related proteins.

Authors:  A Ogiwara; I Uchiyama; Y Seto; M Kanehisa
Journal:  Protein Eng       Date:  1992-09

2.  Automated assembly of protein blocks for database searching.

Authors:  S Henikoff; J G Henikoff
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

3.  Improving the sensitivity of the sequence profile method.

Authors:  R Lüthy; I Xenarios; P Bucher
Journal:  Protein Sci       Date:  1994-01       Impact factor: 6.725

4.  The EMBL Network File Server.

Authors:  P J Stoehr; R A Omond
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

5.  Profile analysis.

Authors:  M Gribskov; R Lüthy; D Eisenberg
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

6.  Profile analysis: detection of distantly related proteins.

Authors:  M Gribskov; A D McLachlan; D Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

7.  Improved sensitivity of profile searches through the use of sequence weights and gap excision.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Comput Appl Biosci       Date:  1994-02

8.  The PROSITE dictionary of sites and patterns in proteins, its current status.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

9.  PROSITE: recent developments.

Authors:  A Bairoch; P Bucher
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

10.  A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors:  R D Appel; A Bairoch; D F Hochstrasser
Journal:  Trends Biochem Sci       Date:  1994-06       Impact factor: 13.807
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  71 in total

1.  Comparison of sequence profiles. Strategies for structural predictions using sequence information.

Authors:  L Rychlewski; L Jaroszewski; W Li; A Godzik
Journal:  Protein Sci       Date:  2000-02       Impact factor: 6.725

Review 2.  Localization of BRCA1 protein at the cellular level.

Authors:  C R De Potter; E D Coene; V R Schelfhout
Journal:  J Mammary Gland Biol Neoplasia       Date:  1998-10       Impact factor: 2.673

3.  The outer dynein arm-docking complex: composition and characterization of a subunit (oda1) necessary for outer arm assembly.

Authors:  Saeko Takada; Curtis G Wilkerson; Ken-ichi Wakabayashi; Ritsu Kamiya; George B Witman
Journal:  Mol Biol Cell       Date:  2002-03       Impact factor: 4.138

4.  Prediction of protein functional domains from sequences using artificial neural networks.

Authors:  J Murvai; K Vlahovicek; C Szepesvári; S Pongor
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

5.  The 65 and 110 kDa SR-related proteins of the U4/U6.U5 tri-snRNP are essential for the assembly of mature spliceosomes.

Authors:  O V Makarova; E M Makarov; R Lührmann
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

6.  Novel type of glucose-6-phosphate isomerase in the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  T Hansen; M Oehlmann; P Schönheit
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

7.  Cloning of a WD-repeat-containing gene from alfalfa (Medicago sativa): a role in hormone-mediated cell division?

Authors:  H I McKhann; F Frugier; G Petrovics; T C de la Peña; E Jurkevitch; S Brown; E Kondorosi; A Kondorosi; M Crespi
Journal:  Plant Mol Biol       Date:  1997-07       Impact factor: 4.076

8.  A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: cloning and characterization of the hpp operon.

Authors:  M R Barnes; W A Duetz; P A Williams
Journal:  J Bacteriol       Date:  1997-10       Impact factor: 3.490

9.  Characterization of a predominant immunogenic outer membrane protein of Riemerella anatipestifer.

Authors:  S Subramaniam; B Huang; H Loh; J Kwang; H M Tan; K L Chua; J Frey
Journal:  Clin Diagn Lab Immunol       Date:  2000-03

10.  A mesangium-predominant gene, megsin, is a new serpin upregulated in IgA nephropathy.

Authors:  T Miyata; M Nangaku; D Suzuki; R Inagi; K Uragami; H Sakai; K Okubo; K Kurokawa
Journal:  J Clin Invest       Date:  1998-08-15       Impact factor: 14.808
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