Literature DB >> 8594581

The SWISS-PROT protein sequence data bank and its new supplement TREMBL.

A Bairoch1, R Apweiler.   

Abstract

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc), a minimal level of redundancy and a high level of integration with other databases. Recent developments of the database include: an increase in the number and scope of model organisms; cross-references to seven additional databases; a variety of new documentation files; the creation of TREMBL, and unannotated supplement to SWISS-PROT. This supplement consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except CDS already included in SWISS-PROT.

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Year:  1996        PMID: 8594581      PMCID: PMC145613          DOI: 10.1093/nar/24.1.21

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Recognition of regulatory regions in genomic sequences.

Authors:  E Wingender
Journal:  J Biotechnol       Date:  1994-06-30       Impact factor: 3.307

2.  The HSSP database of protein structure-sequence alignments.

Authors:  C Sander; R Schneider
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

3.  The European Bioinformatics Institute (EBI) databases.

Authors:  D B Emmert; P J Stoehr; G Stoesser; G N Cameron
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

4.  The SWISS-PROT protein sequence data bank: current status.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

5.  A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors:  R D Appel; A Bairoch; D F Hochstrasser
Journal:  Trends Biochem Sci       Date:  1994-06       Impact factor: 13.807

6.  SubtiList: a relational database for the Bacillus subtilis genome.

Authors:  I Moszer; P Glaser; A Danchin
Journal:  Microbiology       Date:  1995-02       Impact factor: 2.777

7.  LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces.

Authors:  R Dölz; M O Mossé; P P Slonimski; A Bairoch; P Linder
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

8.  A Saccharomyces cerevisiae Internet protein resource now available.

Authors:  G I Latter; T Boutell; P J Monardo; R Kobayashi; B Futcher; C S Mclaughlin; J I Garrels
Journal:  Electrophoresis       Date:  1995-07       Impact factor: 3.535

  8 in total
  111 in total

1.  Visualisation and integration of G protein-coupled receptor related information help the modelling: description and applications of the Viseur program.

Authors:  F Campagne; R Jestin; J L Reversat; J M Bernassau; B Maigret
Journal:  J Comput Aided Mol Des       Date:  1999-11       Impact factor: 3.686

2.  Mendel-GFDb and Mendel-ESTS: databases of plant gene families and ESTs annotated with gene family numbers and gene family names.

Authors:  D Lonsdale; M Crowe; B Arnold; B C Arnold
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics.

Authors:  Y Kuroda; K Tani; Y Matsuo; S Yokoyama
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

4.  Improved detection of homologous membrane proteins by inclusion of information from topology predictions.

Authors:  Maria Hedman; Hans Deloof; Gunnar Von Heijne; Arne Elofsson
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

5.  Path to facilitate the prediction of functional amino acid substitutions in red blood cell disorders--a computational approach.

Authors:  Rajith B; George Priya Doss C
Journal:  PLoS One       Date:  2011-09-13       Impact factor: 3.240

6.  iMOT: an interactive package for the selection of spatially interacting motifs.

Authors:  A Bhaduri; G Pugalenthi; N Gupta; R Sowdhamini
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

7.  Internal duplications in α-helical membrane protein topologies are common but the nonduplicated forms are rare.

Authors:  Aron Hennerdal; Jenny Falk; Erik Lindahl; Arne Elofsson
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

8.  Visualizing information across multidimensional post-genomic structured and textual databases.

Authors:  Ying Tao; Carol Friedman; Yves A Lussier
Journal:  Bioinformatics       Date:  2004-12-14       Impact factor: 6.937

9.  Prion protein NMR structure and species barrier for prion diseases.

Authors:  M Billeter; R Riek; G Wider; S Hornemann; R Glockshuber; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-08       Impact factor: 11.205

10.  Folding of Aquaporin 1: multiple evidence that helix 3 can shift out of the membrane core.

Authors:  Minttu T Virkki; Nitin Agrawal; Elin Edsbäcker; Susana Cristobal; Arne Elofsson; Anni Kauko
Journal:  Protein Sci       Date:  2014-05-14       Impact factor: 6.725

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