Literature DB >> 8810526

Temperature coefficients of amide proton NMR resonance frequencies in trifluoroethanol: a monitor of intramolecular hydrogen bonds in helical peptides.

S Rothemund1, H Weisshoff, M Beyermann, E Krause, M Bienert, C Mügge, B D Sykes, F D Sönnichsen.   

Abstract

2D 1H NMR spectroscopy of two alpha-helical peptides which differ in their amphipathicity has been used to investigate the relationships between amide-proton chemical shifts, amide-proton exchange rates, temperature, and trifluoroethanol (TFE) concentration. In 50% TFE, in which the peptides are maximally helical, the amide-proton chemical shift and temperature coefficient patterns are very similar to each other in each peptide. Temperature coefficients from -10 to -6 ppb/K, usually indicative of the lack of intramolecular hydrogen bonds, were observed even for hydrophobic amino acids in the center of the alpha-helices. However, slow hydrogen isotope exchange for residues from 4 to 16 in both 18-mer helices indicates intact intramolecular hydrogen bonds over most of the length of these peptides. Based on these anomalous observations, we suggest that the pattern of amide-proton shifts in alpha-helices in H20/TFE solvents is dominated by bifurcated intermolecular hydrogen-bond formation between the backbone carbonyl groups and TFE. The amide-proton chemical shift changes with increasing temperature may be interpreted by a disruption of intermolecular hydrogen bonds between carbonyl groups and the TFE in TFE/water rather than by the length of intramolecular hydrogen bonds in alpha-helices.

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Year:  1996        PMID: 8810526     DOI: 10.1007/bf00198143

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  15 in total

1.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

2.  Circular dichroism studies of isoleucine oligopeptides in solution.

Authors:  M Goodman; F Naider; C Toniolo
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

Review 3.  Conformations of the repeat peptides of elastin in solution: an application of proton and carbon-13 magnetic resonance to the determination of polypeptide secondary structure.

Authors:  D W Urry; M M Long
Journal:  CRC Crit Rev Biochem       Date:  1976-06

4.  Protein conformation and proton nuclear-magnetic-resonance chemical shifts.

Authors:  A Pardi; G Wagner; K Wüthrich
Journal:  Eur J Biochem       Date:  1983-12-15

5.  Persistence of the alpha-helix stop signal in the S-peptide in trifluoroethanol solutions.

Authors:  J W Nelson; N R Kallenbach
Journal:  Biochemistry       Date:  1989-06-13       Impact factor: 3.162

6.  Halogenated alcohols as solvents for proteins: FTIR spectroscopic studies.

Authors:  M Jackson; H H Mantsch
Journal:  Biochim Biophys Acta       Date:  1992-01-09

7.  Conformational isomerism of endothelin in acidic aqueous media: a quantitative NOESY analysis.

Authors:  N H Andersen; C P Chen; T M Marschner; S R Krystek; D A Bassolino
Journal:  Biochemistry       Date:  1992-02-11       Impact factor: 3.162

8.  'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

Authors:  G Merutka; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

9.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

10.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

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  8 in total

1.  Isotropic solutions of phospholipid bicelles: a new membrane mimetic for high-resolution NMR studies of polypeptides.

Authors:  R R Vold; R S Prosser; A J Deese
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

2.  High-temperature solution NMR structure of TmCsp.

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Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

3.  Temperature dependence of 1H chemical shifts in proteins.

Authors:  N J Baxter; M P Williamson
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

4.  Structure of the 1-36 amino-terminal fragment of human phospholamban by nuclear magnetic resonance and modeling of the phospholamban pentamer.

Authors:  P Pollesello; A Annila; M Ovaska
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

5.  Structure and solvation of melittin in 1,1,1,3,3,3-hexafluoro-2-propanol/water.

Authors:  J T Gerig
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

6.  Peptaibol zervamicin IIb structure and dynamics refinement from transhydrogen bond J couplings.

Authors:  Z O Shenkarev; T A Balashova; Z A Yakimenko; T V Ovchinnikova; A S Arseniev
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

7.  NMR based solvent exchange experiments to understand the conformational preference of intrinsically disordered proteins using FG-nucleoporin peptide as a model.

Authors:  Kurt A Heisel; V V Krishnan
Journal:  Biopolymers       Date:  2014-01       Impact factor: 2.505

8.  Determination of Amide cis/trans Isomers in N-Acetyl-d-glucosamine: Tailored NMR Analysis of the N-Acetyl Group Conformation.

Authors:  Yan Xue; Gustav Nestor
Journal:  Chembiochem       Date:  2022-07-11       Impact factor: 3.461

  8 in total

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