Literature DB >> 9255942

Temperature dependence of 1H chemical shifts in proteins.

N J Baxter1, M P Williamson.   

Abstract

Temperature coefficients have been measured by 2D NMR methods for the amide and C alpha H proton chemical shifts in two globular proteins, bovine pancreatic trypsin inhibitor and hen egg-white lysozyme. The temperature-dependent changes in chemical shift are generally linear up to about 15 degrees below the global denaturation temperature, and the derived coefficients span a range of roughly -16 to +2 ppb/K for amide protons and -4 to +3 ppb/K for C alpha H. The temperature coefficients can be rationalized by the assumption that heating causes increases in thermal motion in the protein. Precise calculations of temperature coefficients derived from protein coordinates are not possible, since chemical shifts are sensitive to small changes in atomic coordinates. Amide temperature coefficients correlate well with the location of hydrogen bonds as determined by crystallography. It is concluded that a combined use of both temperature coefficients and exchange rates produces a far more reliable indicator of hydrogen bonding than either alone. If an amide proton exchanges slowly and has a temperature coefficient more positive than -4.5 ppb/K, it is hydrogen bonded, while if it exchanges rapidly and has a temperature coefficient more negative than -4.5 ppb/K, it is not hydrogen bonded. The previously observed unreliability of temperature coefficients as measures of hydrogen bonding in peptides may arise from losses of peptide secondary structure on heating.

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Year:  1997        PMID: 9255942     DOI: 10.1023/a:1018334207887

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  32 in total

1.  The influence of temperature on lysozyme crystals. Structure and dynamics of protein and water.

Authors:  I V Kurinov; R W Harrison
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1995-01-01

2.  Structures of triclinic mono- and di-N-acetylglucosamine: lysozyme complexes--a crystallographic study.

Authors:  K Kurachi; L C Sieker; L H Jensen
Journal:  J Mol Biol       Date:  1976-02-15       Impact factor: 5.469

3.  The relationship between amide proton chemical shifts and secondary structure in proteins.

Authors:  T Asakura; K Taoka; M Demura; M P Williamson
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

4.  Protein structures in solution by nuclear magnetic resonance and distance geometry. The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN.

Authors:  G Wagner; W Braun; T F Havel; T Schaumann; N Go; K Wüthrich
Journal:  J Mol Biol       Date:  1987-08-05       Impact factor: 5.469

5.  Application of 1H NMR chemical shifts to measure the quality of protein structures.

Authors:  M P Williamson; J Kikuchi; T Asakura
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

6.  Structure and internal dynamics of the bovine pancreatic trypsin inhibitor in aqueous solution from long-time molecular dynamics simulations.

Authors:  R M Brunne; K D Berndt; P Güntert; K Wüthrich; W F van Gunsteren
Journal:  Proteins       Date:  1995-09

7.  Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

Authors:  M Buck; J Boyd; C Redfield; D A MacKenzie; D J Jeenes; D B Archer; C M Dobson
Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162

8.  Internal mobility of the basic pancreatic trypsin inhibitor in solution: a comparison of NMR spin relaxation measurements and molecular dynamics simulations.

Authors:  P E Smith; R C van Schaik; T Szyperski; K Wüthrich; W F van Gunsteren
Journal:  J Mol Biol       Date:  1995-02-17       Impact factor: 5.469

Review 9.  Hydrogen exchange and the dynamic structure of proteins.

Authors:  C Woodward; I Simon; E Tüchsen
Journal:  Mol Cell Biochem       Date:  1982-10-29       Impact factor: 3.396

10.  Assignment of asparagine-44 side-chain primary amide 1H NMR resonances and the peptide amide N1H resonance of glycine-37 in basic pancreatic trypsin inhibitor.

Authors:  E Tüchsen; C Woodward
Journal:  Biochemistry       Date:  1987-04-07       Impact factor: 3.162

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  132 in total

1.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

2.  Amide temperature coefficients in the protein G B1 domain.

Authors:  Jennifer H Tomlinson; Mike P Williamson
Journal:  J Biomol NMR       Date:  2011-11-11       Impact factor: 2.835

3.  High-temperature solution NMR structure of TmCsp.

Authors:  Astrid Jung; Christian Bamann; Werner Kremer; Hans Robert Kalbitzer; Eike Brunner
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

4.  An alternative flexible conformation of the E. coli HUβ₂ protein: structural, dynamics, and functional aspects.

Authors:  Norbert Garnier; Karine Loth; Franck Coste; Rafal Augustyniak; Virginie Nadan; Christian Damblon; Bertrand Castaing
Journal:  Eur Biophys J       Date:  2010-10-10       Impact factor: 1.733

5.  Binding hot spot for invasion inhibitory molecules on Plasmodium falciparum apical membrane antigen 1.

Authors:  Karen S Harris; Joanne L Casey; Andrew M Coley; Rosella Masciantonio; Jennifer K Sabo; David W Keizer; Erinna F Lee; Andrew McMahon; Raymond S Norton; Robin F Anders; Michael Foley
Journal:  Infect Immun       Date:  2005-10       Impact factor: 3.441

6.  Evaluation of biologically relevant short alpha-helices stabilized by a main-chain hydrogen-bond surrogate.

Authors:  Deyun Wang; Kang Chen; John L Kulp Iii; Paramjit S Arora
Journal:  J Am Chem Soc       Date:  2006-07-19       Impact factor: 15.419

7.  Mimotopes of apical membrane antigen 1: Structures of phage-derived peptides recognized by the inhibitory monoclonal antibody 4G2dc1 and design of a more active analogue.

Authors:  Jennifer K Sabo; David W Keizer; Zhi-Ping Feng; Joanne L Casey; Kathy Parisi; Andrew M Coley; Michael Foley; Raymond S Norton
Journal:  Infect Immun       Date:  2006-10-23       Impact factor: 3.441

8.  Distinguishing among structural ensembles of the GB1 peptide: REMD simulations and NMR experiments.

Authors:  Daniel S Weinstock; Chitra Narayanan; Anthony K Felts; Michael Andrec; Ronald M Levy; Kuen-Phon Wu; Jean Baum
Journal:  J Am Chem Soc       Date:  2007-04-03       Impact factor: 15.419

9.  Nucleation and stability of hydrogen-bond surrogate-based alpha-helices.

Authors:  Deyun Wang; Kang Chen; Gianluca Dimartino; Paramjit S Arora
Journal:  Org Biomol Chem       Date:  2006-11-21       Impact factor: 3.876

10.  Template-constrained macrocyclic peptides prepared from native, unprotected precursors.

Authors:  Kenneth V Lawson; Tristan E Rose; Patrick G Harran
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

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