Literature DB >> 15111429

Structure and solvation of melittin in 1,1,1,3,3,3-hexafluoro-2-propanol/water.

J T Gerig1.   

Abstract

Fluorinated alcohols can induce peptides and proteins to take up helical conformations. Nuclear Overhauser effect (NOE) spectroscopy experiments and analysis of C(alpha)H proton chemical shifts show that the conformation of melittin in 35% hexafluoro-2-propanol/water is alpha-helical from residues Ile-2 to Val-8 and from Leu-13 to Gln-25. As has been found in other solvent systems, the two helical regions are not colinear; the interhelix angle (73 +/- 15 degrees ) in 35% 1,1,1,3,3,3-hexafluoro-2-propanol/water is smaller than the angle found in other fluoroalcohol-water mixtures or in the crystal. Intermolecular (1)H(19)F and (1)H(1)H nuclear Overhauser effects were used to explore interaction of solvent components with melittin dissolved in this solvent mixture. The NOEs observed indicate that fluoroalcohol and water molecules are both tightly bound to the peptide in the vicinity of the interhelix bend. For the remainder of the molecule, solute-solvent NOEs are consistent with preferential solvation of the peptide by the fluoroalcohol component of the solvent mixture.

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Year:  2004        PMID: 15111429      PMCID: PMC1304181          DOI: 10.1016/S0006-3495(04)74364-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Cooperative alpha-helix formation of beta-lactoglobulin and melittin induced by hexafluoroisopropanol.

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Authors:  M J Bodkin; J M Goodfellow
Journal:  Biopolymers       Date:  1996-07       Impact factor: 2.505

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Authors:  T C Terwilliger; D Eisenberg
Journal:  J Biol Chem       Date:  1982-06-10       Impact factor: 5.157

6.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

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Journal:  Eur J Biochem       Date:  1988-04-05

8.  Molecular dynamics simulation of the antimicrobial salivary peptide histatin-5 in water and in trifluoroethanol: a microscopic description of the water destructuring effect.

Authors:  M Iovino; M Falconi; A Marcellini; A Desideri
Journal:  J Pept Res       Date:  2001-07

9.  Solute-solvent interactions probed by intermolecular NOEs.

Authors:  J T Gerig
Journal:  J Org Chem       Date:  2003-06-27       Impact factor: 4.354

10.  'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

Authors:  G Merutka; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

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  10 in total

1.  Effect of hexafluoroisopropanol alcohol on the structure of melittin: a molecular dynamics simulation study.

Authors:  Danilo Roccatano; Marco Fioroni; Martin Zacharias; Giorgio Colombo
Journal:  Protein Sci       Date:  2005-09-09       Impact factor: 6.725

2.  A molecular dynamics study of the bee venom melittin in aqueous solution, in methanol, and inserted in a phospholipid bilayer.

Authors:  Alice Glättli; Indira Chandrasekhar; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2005-12-02       Impact factor: 1.733

3.  Conformational sampling of peptides in cellular environments.

Authors:  Seiichiro Tanizaki; Jacob Clifford; Brian D Connelly; Michael Feig
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4.  Solvation in protein (un)folding of melittin tetramer-monomer transition.

Authors:  Christina M Othon; Oh-Hoon Kwon; Milo M Lin; Ahmed H Zewail
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5.  Structure and dynamics of the extended-helix state of alpha-synuclein: Intrinsic lability of the linker region.

Authors:  Yoon-Hui Sung; David Eliezer
Journal:  Protein Sci       Date:  2018-07       Impact factor: 6.725

6.  Circular dichroism and UV resonance raman study of the impact of alcohols on the Gibbs free energy landscape of an alpha-helical peptide.

Authors:  Kan Xiong; Sanford A Asher
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

7.  Effects of solvent on the structure of the Alzheimer amyloid-beta(25-35) peptide.

Authors:  Guanghong Wei; Joan-Emma Shea
Journal:  Biophys J       Date:  2006-06-09       Impact factor: 4.033

8.  Mechanisms of amphipathic helical peptide denaturation by guanidinium chloride and urea: a molecular dynamics simulation study.

Authors:  Faramarz Mehrnejad; Mahmoud Khadem-Maaref; Mohammad Mehdi Ghahremanpour; Farahnoosh Doustdar
Journal:  J Comput Aided Mol Des       Date:  2010-08-10       Impact factor: 3.686

9.  Conformational changes of alpha-chymotrypsin in a fibrillation-promoting condition: a molecular dynamics study.

Authors:  Nasrollah Rezaei-Ghaleh; Mehriar Amininasab; Mohsen Nemat-Gorgani
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

10.  Critical structural and functional roles for the N-terminal insertion sequence in surfactant protein B analogs.

Authors:  Frans J Walther; Alan J Waring; Jose M Hernandez-Juviel; Larry M Gordon; Zhengdong Wang; Chun-Ling Jung; Piotr Ruchala; Andrew P Clark; Wesley M Smith; Shantanu Sharma; Robert H Notter
Journal:  PLoS One       Date:  2010-01-13       Impact factor: 3.240

  10 in total

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