Literature DB >> 8516331

Nonexponential protein relaxation: dynamics of conformational change in myoglobin.

M Lim1, T A Jackson, P A Anfinrud.   

Abstract

The picosecond evolution of the tertiary conformation of myoglobin (Mb) after photodissociation of MbCO was investigated at room temperature by probing band III, a weak iron-porphyrin charge-transfer transition near 13,110 cm-1 (763 nm) that is sensitive to the out-of-plane displacement of the iron. Upon photolysis, the iron moves out of the plane of the porphyrin, causing a blue-shift of band III and a concomitant change in the protein conformation. The dynamics for this functionally important motion are highly nonexponential, in agreement with recent molecular dynamics simulations [Kuczera, K., Lambry, J.-C., Martin, J.-L. & Karplus, M. (1993) Proc. Natl. Acad. Sci. USA 90, 5805-5807]. The conformational change likely affects the height of the barrier to ligand rebinding and may explain nonexponential NO rebinding.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8516331      PMCID: PMC46810          DOI: 10.1073/pnas.90.12.5801

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Relaxation dynamics of myoglobin in solution.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-01-20       Impact factor: 9.161

2.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

3.  Ligand binding and protein relaxation in heme proteins: a room temperature analysis of NO geminate recombination.

Authors:  J W Petrich; J C Lambry; K Kuczera; M Karplus; C Poyart; J L Martin
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

4.  Protein conformational relaxation following photodissociation of CO from carbonmonoxymyoglobin: picosecond circular dichroism and absorption studies.

Authors:  X L Xie; J D Simon
Journal:  Biochemistry       Date:  1991-04-16       Impact factor: 3.162

5.  Thermal behavior of the 760-nm absorption band in photodissociated sperm whale carbonmonoxymyoglobin at cryogenic temperature: dependence on external medium.

Authors:  L Cordone; A Cupane; M Leone; E Vitrano
Journal:  Biopolymers       Date:  1990-02-15       Impact factor: 2.505

6.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

7.  Low temperature photodissociation of hemoproteins: carbon monoxide complex of myoglobin and hemoglobin.

Authors:  T Iizuka; H Yamamoto; M Kotani; T Yonetani
Journal:  Biochim Biophys Acta       Date:  1974-11-05

8.  Structure of myoglobin refined at 2-0 A resolution. II. Structure of deoxymyoglobin from sperm whale.

Authors:  T Takano
Journal:  J Mol Biol       Date:  1977-03-05       Impact factor: 5.469

9.  Nonexponential relaxation after ligand dissociation from myoglobin: a molecular dynamics simulation.

Authors:  K Kuczera; J C Lambry; J L Martin; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

10.  Ultrafast relaxation in picosecond photolysis of nitrosylhemoglobin.

Authors:  P A Cornelius; R M Hochstrasser; A W Steele
Journal:  J Mol Biol       Date:  1983-01-05       Impact factor: 5.469

View more
  30 in total

1.  Protein dynamics in an intermediate state of myoglobin: optical absorption, resonance Raman spectroscopy, and x-ray structure analysis.

Authors:  N Engler; A Ostermann; A Gassmann; D C Lamb; V E Prusakov; J Schott; R Schweitzer-Stenner; F G Parak
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  The effect of ligand dynamics on heme electronic transition band III in myoglobin.

Authors:  Karin Nienhaus; Don C Lamb; Pengchi Deng; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Theoretical investigation of infrared spectra and pocket dynamics of photodissociated carbonmonoxy myoglobin.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

4.  Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography.

Authors:  Dominique Bourgeois; Beatrice Vallone; Friedrich Schotte; Alessandro Arcovito; Adriana E Miele; Giuliano Sciara; Michael Wulff; Philip Anfinrud; Maurizio Brunori
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-07       Impact factor: 11.205

5.  Doming modes and dynamics of model heme compounds.

Authors:  Dennis D Klug; Marek Z Zgierski; John S Tse; Zhenxian Liu; James R Kincaid; Kazimierz Czarnecki; Russell J Hemley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

6.  Different relaxations in myoglobin after photolysis.

Authors:  Matteo Levantino; Antonio Cupane; László Zimányi; Pál Ormos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-22       Impact factor: 11.205

7.  Coupling of protein relaxation to ligand binding and migration in myoglobin.

Authors:  Noam Agmon
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

8.  Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.

Authors:  Hyun Sun Cho; Naranbaatar Dashdorj; Friedrich Schotte; Timothy Graber; Robert Henning; Philip Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-06       Impact factor: 11.205

9.  Relation between fluorescence decays and temporal evolution of excited states.

Authors:  János Erostyák; Géza Makkai; Andrea Buzády; Péter Molnár; Sergei V Kukhlevsky
Journal:  J Fluoresc       Date:  2006-02-14       Impact factor: 2.217

Review 10.  Myoglobin strikes back.

Authors:  Maurizio Brunori
Journal:  Protein Sci       Date:  2010-02       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.