Literature DB >> 8516288

On the directional specificity of ribosome frameshifting at a "hungry" codon.

D Lindsley1, J Gallant.   

Abstract

Limitation for aminoacyl-tRNA promotes ribosome frameshifting at certain sites. We have previously demonstrated ribosome frameshifting to the right (3') at an AAG site in one context, and to the left (5') at an AAG site in a different context. Here, we demonstrate that the "rightwing" context is largely specific for frameshifting to the right, and the "leftwing" context is largely specific for frameshifting to the left. Analysis of these context rules, and the conversion of a sequence that promotes leftward frameshifting to one that promotes rightward frameshifting, demonstrated here, permits us to define a minimal heptanucleotide sequence sufficient for shiftiness in each direction at an AAG codon whose lysyl-tRNA is in short supply.

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Year:  1993        PMID: 8516288      PMCID: PMC46742          DOI: 10.1073/pnas.90.12.5469

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  69 in total

1.  Frameshifting in gene 10 of bacteriophage T7.

Authors:  B G Condron; J F Atkins; R F Gesteland
Journal:  J Bacteriol       Date:  1991-11       Impact factor: 3.490

2.  The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting.

Authors:  A M Flower; C S McHenry
Journal:  Proc Natl Acad Sci U S A       Date:  1990-05       Impact factor: 11.205

3.  The CDC25 protein of Saccharomyces cerevisiae promotes exchange of guanine nucleotides bound to ras.

Authors:  S Jones; M L Vignais; J R Broach
Journal:  Mol Cell Biol       Date:  1991-05       Impact factor: 4.272

4.  E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent.

Authors:  R B Weiss; D M Dunn; M Shuh; J F Atkins; R F Gesteland
Journal:  New Biol       Date:  1989-11

5.  Rapid intracellular alkalinization of Saccharomyces cerevisiae MATa cells in response to alpha-factor requires the CDC25 gene product.

Authors:  R Perlman; Y Eilam; E Padan; G Simchen; A Levitzki
Journal:  Cell Signal       Date:  1989       Impact factor: 4.315

6.  FUS3 represses CLN1 and CLN2 and in concert with KSS1 promotes signal transduction.

Authors:  E A Elion; J A Brill; G R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

7.  Pheromone response elements are necessary and sufficient for basal and pheromone-induced transcription of the FUS1 gene of Saccharomyces cerevisiae.

Authors:  D C Hagen; G McCaffrey; G F Sprague
Journal:  Mol Cell Biol       Date:  1991-06       Impact factor: 4.272

8.  Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site.

Authors:  M F Belcourt; P J Farabaugh
Journal:  Cell       Date:  1990-07-27       Impact factor: 41.582

Review 9.  The where, what and how of ribosomal frameshifting in retroviral protein synthesis.

Authors:  D Hatfield; S Oroszlan
Journal:  Trends Biochem Sci       Date:  1990-05       Impact factor: 13.807

Review 10.  Ribosome gymnastics--degree of difficulty 9.5, style 10.0.

Authors:  J F Atkins; R B Weiss; R F Gesteland
Journal:  Cell       Date:  1990-08-10       Impact factor: 41.582

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  21 in total

1.  Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Jiadong Zhou; Andrew W Hammer; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

2.  Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging.

Authors:  Dale Lindsley; Paul Bonthuis; Jonathan Gallant; Teodora Tofoleanu; Johan Elf; Måns Ehrenberg
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

Review 3.  Programmed translational frameshifting.

Authors:  P J Farabaugh
Journal:  Microbiol Rev       Date:  1996-03

4.  Point mutations in the mitochondrial tRNA(Lys) gene: implications for pathogenesis and mechanism.

Authors:  J P Masucci; E A Schon; M P King
Journal:  Mol Cell Biochem       Date:  1997-09       Impact factor: 3.396

Review 5.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

6.  Expression levels influence ribosomal frameshifting at the tandem rare arginine codons AGG_AGG and AGA_AGA in Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  J Bacteriol       Date:  2005-06       Impact factor: 3.490

7.  Spermidine deficiency increases +1 ribosomal frameshifting efficiency and inhibits Ty1 retrotransposition in Saccharomyces cerevisiae.

Authors:  D Balasundaram; J D Dinman; R B Wickner; C W Tabor; H Tabor
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-04       Impact factor: 11.205

8.  Partial rescue of human carbonic anhydrase II frameshift mutation by ribosomal frameshift.

Authors:  P Y Hu; A Waheed; W S Sly
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-14       Impact factor: 11.205

9.  Effects of a minor isoleucyl tRNA on heterologous protein translation in Escherichia coli.

Authors:  B J Del Tito; J M Ward; J Hodgson; C J Gershater; H Edwards; L A Wysocki; F A Watson; G Sathe; J F Kane
Journal:  J Bacteriol       Date:  1995-12       Impact factor: 3.490

10.  Engineering of an elastic scaffolding polyprotein based on an SH3-binding intrinsically disordered titin PEVK module.

Authors:  Wanxia Li Tsai; Jeffrey G Forbes; Kuan Wang
Journal:  Protein Expr Purif       Date:  2012-08-14       Impact factor: 1.650

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