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Literature DB >> 9016547

The translational signal database, TransTerm: more organisms, complete genomes.

M E Dalphin¹, C M Brown, P A Stockwell, W P Tate.

Abstract

TransTerm is a database of initiation and termination sequence contexts from more than 250 organisms listed in GenBank, including the four complete genomes:Haemophilus influenzae, Methanococcus jannaschii, Mycoplasma genitalium,and Saccharomyces cerevisiae. For the current release, more than 60 000 coding sequences were analysed. The tabulated data include initiation and termination contexts organised by species along with quantitative parameters about individual coding sequences (length, %GC, GC3, Nc and CAI). There are also tables of initiation- and termination-region nucleotide-frequencies, codon usage tables and summaries of stop signal usage. TransTerm is available on the World Wide Web at: http://biochem.otago.ac.nz:800/Transterm/homepage.h tml

Entities: Species

Mesh：

Year: 1997 PMID： 9016547 PMCID： PMC146403 DOI： 10.1093/nar/25.1.246

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

21 in total

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10. The translational termination signal database.

Authors: C M Brown; M E Dalphin; P A Stockwell; W P Tate
Journal: Nucleic Acids Res Date: 1993-07-01 Impact factor: 16.971

5 in total

1. Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX.

Authors: T Shtatland; S C Gill; B E Javornik; H E Johansson; B S Singer; O C Uhlenbeck; D A Zichi; L Gold
Journal: Nucleic Acids Res Date: 2000-11-01 Impact factor: 16.971

2. The translational signal database, TransTerm, is now a relational database.

Authors: M E Dalphin; C M Brown; P A Stockwell; W P Tate
Journal: Nucleic Acids Res Date: 1998-01-01 Impact factor: 16.971

3. Translational termination in Escherichia coli: three bases following the stop codon crosslink to release factor 2 and affect the decoding efficiency of UGA-containing signals.

Authors: E S Poole; L L Major; S A Mannering; W P Tate
Journal: Nucleic Acids Res Date: 1998-02-15 Impact factor: 16.971

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Journal: EMBO Rep Date: 2001-08-23 Impact factor: 8.807

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Authors: Reine U Protacio; Aaron J Storey; Mari K Davidson; Wayne P Wahls
Journal: Curr Genet Date: 2014-12-18 Impact factor: 3.886

5 in total