Literature DB >> 2226798

Analysis of the stop codon context in plant nuclear genes.

G Angenon1, M Van Montagu, A Depicker.   

Abstract

A region of 18 nucleotides surrounding the stop codon (the stop codon context) in 748 plant nuclear genes was analyzed. Non-randomness was found both upstream and downstream from the stop codon, suggesting that these sequences may help in ensuring efficient termination of translation. The UAG amber codon is the least-used stop codon and the bias in the nucleotide distribution 5' and 3' to the stop codon was more pronounced for the amber codon than for the other stop codons. This might indicate that the codon context affects termination more at UAG than at UGA or UAA stop codons.

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Year:  1990        PMID： 2226798     DOI： 10.1016/0014-5793(90)80392-v

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  16 in total

1.  The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames.

Authors:  Bijoyita Roy; Justin N Vaughn; Byung-Hoon Kim; Fujun Zhou; Michael A Gilchrist; Albrecht G Von Arnim
Journal:  RNA       Date:  2010-02-23       Impact factor: 4.942

2.  Amber codon suppression: the in vivo and in vitro analysis of two C-hordein genes from barley.

Authors:  J Entwistle; S Knudsen; M Müller; V Cameron-Mills
Journal:  Plant Mol Biol       Date:  1991-12       Impact factor: 4.076

3.  UGA suppression by tRNACmCATrp occurs in diverse virus RNAs due to a limited influence of the codon context.

Authors:  C Urban; K Zerfass; C Fingerhut; H Beier
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

4.  Transfer RNA-mediated suppression of stop codons in protoplasts and transgenic plants.

Authors:  V T Carneiro; G Pelletier; I Small
Journal:  Plant Mol Biol       Date:  1993-07       Impact factor: 4.076

5.  Genome-wide variation of the somatic mutation frequency in transgenic plants.

Authors:  I Kovalchuk; O Kovalchuk; B Hohn
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

Review 6.  Termination of protein synthesis.

Authors:  M F Tuite; I Stansfield
Journal:  Mol Biol Rep       Date:  1994-05       Impact factor: 2.316

7.  The translational termination signal database.

Authors:  C M Brown; M E Dalphin; P A Stockwell; W P Tate
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

8.  Overexpression, crystallization and preliminary X-ray crystallographic analysis of release factor eRF1-1 from Arabidopsis thaliana.

Authors:  Yan An; Yongfeng Lou; Yingwu Xu
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-30

9.  On the relationship between preferred termination codon contexts and nonsense suppression in human cells.

Authors:  R Martin
Journal:  Nucleic Acids Res       Date:  1994-01-11       Impact factor: 16.971

10.  Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context.

Authors:  K Zerfass; H Beier
Journal:  Nucleic Acids Res       Date:  1992-11-25       Impact factor: 16.971
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