Literature DB >> 8251939

Dominant role of local dipoles in stabilizing uncompensated charges on a sulfate sequestered in a periplasmic active transport protein.

J J He1, F A Quiocho.   

Abstract

Electrostatic interactions are among the key factors determining the structure and function of proteins. Here we report experimental results that illuminate the functional importance of local dipoles to these interactions. The refined 1.7-A X-ray structure of the liganded form of the sulfate-binding protein, a primary sulfate active transport receptor of Salmonella typhimurium, shows that the sulfate dianion is completely buried and bound by hydrogen bonds (mostly main-chain peptide NH groups) and van der Waals forces. The sulfate is also closely linked, via one of these peptide units, to a His residue. It is also adjacent to the N-termini of three alpha-helices, of which the two shortest have their C-termini "capped" by Arg residues. Site-directed mutagenesis of the recombinant Escherichia coli sulfate receptor had no effect on sulfate-binding activity when an Asn residue was substituted for the positively charged His and the two Arg (changed singly and together) residues. These results, combined with other observations, further solidify the idea that stabilization of uncompensated charges in a protein is a highly localized process that involves a collection of local dipoles, including those of peptide units confined to the first turns of helices. The contribution of helix macrodipoles appears insignificant.

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Year:  1993        PMID: 8251939      PMCID: PMC2142251          DOI: 10.1002/pro.5560021010

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  16 in total

1.  Stabilization of protein structure by interaction of alpha-helix dipole with a charged side chain.

Authors:  D Sali; M Bycroft; A R Fersht
Journal:  Nature       Date:  1988-10-20       Impact factor: 49.962

2.  Refined structure of glutathione reductase at 1.54 A resolution.

Authors:  P A Karplus; G E Schulz
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

3.  Enhanced protein thermostability from designed mutations that interact with alpha-helix dipoles.

Authors:  H Nicholson; W J Becktel; B W Matthews
Journal:  Nature       Date:  1988-12-15       Impact factor: 49.962

4.  Purification and properties of a sulfate-binding protein from Salmonella typhimurium.

Authors:  A B Pardee
Journal:  J Biol Chem       Date:  1966-12-25       Impact factor: 5.157

Review 5.  The role of the alpha-helix dipole in protein function and structure.

Authors:  W G Hol
Journal:  Prog Biophys Mol Biol       Date:  1985       Impact factor: 3.667

6.  Helix signals in proteins.

Authors:  L G Presta; G D Rose
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

7.  Structure of the semiquinone form of flavodoxin from Clostridum MP. Extension of 1.8 A resolution and some comparisons with the oxidized state.

Authors:  W W Smith; R M Burnett; G D Darling; M L Ludwig
Journal:  J Mol Biol       Date:  1977-11-25       Impact factor: 5.469

8.  The alpha-helix dipole and the properties of proteins.

Authors:  W G Hol; P T van Duijnen; H J Berendsen
Journal:  Nature       Date:  1978-06-08       Impact factor: 49.962

9.  The 2 A resolution structure of the sulfate-binding protein involved in active transport in Salmonella typhimurium.

Authors:  J W Pflugrath; F A Quiocho
Journal:  J Mol Biol       Date:  1988-03-05       Impact factor: 5.469

10.  Sulphate sequestered in the sulphate-binding protein of Salmonella typhimurium is bound solely by hydrogen bonds.

Authors:  J W Pflugrath; F A Quiocho
Journal:  Nature       Date:  1985 Mar 21-27       Impact factor: 49.962

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  21 in total

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Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

2.  Solute carriers keep on rockin'.

Authors:  Reinhart A F Reithmeier; Trevor F Moraes
Journal:  Nat Struct Mol Biol       Date:  2015-10       Impact factor: 15.369

3.  Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family.

Authors:  Eric R Geertsma; Yung-Ning Chang; Farooque R Shaik; Yvonne Neldner; Els Pardon; Jan Steyaert; Raimund Dutzler
Journal:  Nat Struct Mol Biol       Date:  2015-09-14       Impact factor: 15.369

4.  A protein switch sensing system for the quantification of sulfate.

Authors:  Krystal Teasley Hamorsky; Charles Mark Ensor; Patrizia Pasini; Sylvia Daunert
Journal:  Anal Biochem       Date:  2011-10-18       Impact factor: 3.365

5.  Dominant role of local dipolar interactions in phosphate binding to a receptor cleft with an electronegative charge surface: equilibrium, kinetic, and crystallographic studies.

Authors:  P S Ledvina; A L Tsai; Z Wang; E Koehl; F A Quiocho
Journal:  Protein Sci       Date:  1998-12       Impact factor: 6.725

6.  Negative electrostatic surface potential of protein sites specific for anionic ligands.

Authors:  P S Ledvina; N Yao; A Choudhary; F A Quiocho
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

7.  The partial charge of the nitrogen atom in peptide bonds.

Authors:  E J Milner-White
Journal:  Protein Sci       Date:  1997-11       Impact factor: 6.725

8.  Anion binding to the ubiquitin molecule.

Authors:  G I Makhatadze; M M Lopez; J M Richardson; S T Thomas
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

9.  Influence of peptide dipoles and hydrogen bonds on reactive cysteine pKa values in fission yeast DJ-1.

Authors:  Peter Madzelan; Tetyana Labunska; Mark A Wilson
Journal:  FEBS J       Date:  2012-10-11       Impact factor: 5.542

Review 10.  Catalytic scaffolds for phosphoryl group transfer.

Authors:  Karen N Allen; Debra Dunaway-Mariano
Journal:  Curr Opin Struct Biol       Date:  2016-08-13       Impact factor: 6.809

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