Literature DB >> 8248185

Rapid assembly of the bacteriophage T4 core replication complex on a linear primer/template construct.

B F Kaboord1, S J Benkovic.   

Abstract

DNA synthesis on a primed DNA substrate by bacteriophage T4 requires the assembly of a core replication complex consisting of the T4 DNA polymerase, a single-stranded binding protein (32 protein), and the accessory proteins 44/62 and 45. In this paper, we demonstrate the successful assembly of this core complex on a short linear primer/template system at levels of accessory proteins equivalent to the concentration of primer 3' ends. The key to this assembly is the presence of streptavidin molecules bound at each end of the DNA substrate via biotin moieties incorporated into the template strand. Streptavidin serves to block the ends of the primer/template, thus preventing translocation of the accessory proteins away from the site of assembly and their subsequent dissociation from the ends of the primer/template. Complex assembly on this substrate requires ATP and the presence of both the 44/62 and 45 proteins. The time required for assembly of a full enzyme equivalent of complex in our system is approximately 2 s.

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Year:  1993        PMID: 8248185      PMCID: PMC47882          DOI: 10.1073/pnas.90.22.10881

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Structural and enzymatic studies of the T4 DNA replication system. I. Physical characterization of the polymerase accessory protein complex.

Authors:  T C Jarvis; L S Paul; P H von Hippel
Journal:  J Biol Chem       Date:  1989-07-25       Impact factor: 5.157

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Journal:  Adv Protein Chem       Date:  1975

3.  Mechanism of DNA polymerase I: exonuclease/polymerase activity switch and DNA sequence dependence of pyrophosphorolysis and misincorporation reactions.

Authors:  V Mizrahi; P Benkovic; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1986-08       Impact factor: 11.205

4.  Rapid kinetic analysis of mechanochemical adenosinetriphosphatases.

Authors:  K A Johnson
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

5.  Kinetic mechanism of DNA polymerase I (Klenow).

Authors:  R D Kuchta; V Mizrahi; P A Benkovic; K A Johnson; S J Benkovic
Journal:  Biochemistry       Date:  1987-12-15       Impact factor: 3.162

Review 6.  Prokaryotic DNA replication mechanisms.

Authors:  B M Alberts
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1987-12-15       Impact factor: 6.237

7.  Characterization of the stimulatory effect of T4 gene 45 protein and the gene 44/62 protein complex on DNA synthesis by T4 DNA polymerase.

Authors:  D C Mace; B M Alberts
Journal:  J Mol Biol       Date:  1984-08-05       Impact factor: 5.469

8.  The complex of T4 bacteriophage gene 44 and 62 replication proteins forms an ATPase that is stimulated by DNA and by T4 gene 45 protein.

Authors:  D C Mace; B M Alberts
Journal:  J Mol Biol       Date:  1984-08-05       Impact factor: 5.469

9.  Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template.

Authors:  C C Huang; J E Hearst; B M Alberts
Journal:  J Biol Chem       Date:  1981-04-25       Impact factor: 5.157

10.  Assembly of a functional replication complex without ATP hydrolysis: a direct interaction of bacteriophage T4 gp45 with T4 DNA polymerase.

Authors:  M K Reddy; S E Weitzel; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

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  13 in total

1.  Opening of a monomer-monomer interface of the trimeric bacteriophage T4-coded GP45 sliding clamp is required for clamp loading onto DNA.

Authors:  G J Latham; F Dong; P Pietroni; J M Dozono; D J Bacheller; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

2.  Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer.

Authors:  M A Trakselis; S C Alley; E Abel-Santos; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

3.  Idling by DNA polymerase delta maintains a ligatable nick during lagging-strand DNA replication.

Authors:  Parie Garg; Carrie M Stith; Nasim Sabouri; Erik Johansson; Peter M Burgers
Journal:  Genes Dev       Date:  2004-11-01       Impact factor: 11.361

4.  Assembly of the bacteriophage T4 primosome: single-molecule and ensemble studies.

Authors:  Zhiquan Zhang; Michelle M Spiering; Michael A Trakselis; Faoud T Ishmael; Jun Xi; Stephen J Benkovic; Gordon G Hammes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-22       Impact factor: 11.205

5.  RNA primer handoff in bacteriophage T4 DNA replication: the role of single-stranded DNA-binding protein and polymerase accessory proteins.

Authors:  Scott W Nelson; Ravindra Kumar; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2008-05-28       Impact factor: 5.157

6.  A cell cycle-regulated adenine DNA methyltransferase from Caulobacter crescentus processively methylates GANTC sites on hemimethylated DNA.

Authors:  A J Berdis; I Lee; J K Coward; C Stephens; R Wright; L Shapiro; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

7.  The carboxyl terminus of the bacteriophage T4 DNA polymerase is required for holoenzyme complex formation.

Authors:  A J Berdis; P Soumillion; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

8.  The rate of polymerase release upon filling the gap between Okazaki fragments is inadequate to support cycling during lagging strand synthesis.

Authors:  Paul R Dohrmann; Carol M Manhart; Christopher D Downey; Charles S McHenry
Journal:  J Mol Biol       Date:  2011-10-01       Impact factor: 5.469

Review 9.  Understanding DNA replication by the bacteriophage T4 replisome.

Authors:  Stephen J Benkovic; Michelle M Spiering
Journal:  J Biol Chem       Date:  2017-09-25       Impact factor: 5.157

10.  Chemical modifications of DNA for study of helicase mechanisms.

Authors:  Kevin D Raney
Journal:  Bioorg Med Chem       Date:  2014-06-02       Impact factor: 3.641

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