Literature DB >> 15728347

Assembly of the bacteriophage T4 primosome: single-molecule and ensemble studies.

Zhiquan Zhang1, Michelle M Spiering, Michael A Trakselis, Faoud T Ishmael, Jun Xi, Stephen J Benkovic, Gordon G Hammes.   

Abstract

Within replisomes for DNA replication, the primosome is responsible for unwinding double-stranded DNA and synthesizing RNA primers. Assembly of the bacteriophage T4 primosome on individual molecules of ssDNA or forked DNA (fDNA) has been studied by using FRET microscopy. On either DNA substrate, an ordered process of assembly begins with tight 1:1 binding of ssDNA-binding protein (gp32) and helicase-loading protein (gp59) to the DNA. Magnesium adenosine 5'-O-(3-thiotriphosphate) (MgATPgammaS) mediates the weak binding of helicase (gp41) to DNA coated with gp32 and gp59, whereas MgATP induces gp32 and gp59 to dissociate, leaving gp41 bound to the DNA. Finally, primase (gp61) binds to the gp41.DNA complex. Ensemble studies were used to determine protein stoichiometries and binding constants. These single-molecule studies provide an unambiguous description of the pathway for assembly of the primosome on the lagging strand of DNA at a replication fork.

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Year:  2005        PMID: 15728347      PMCID: PMC552937          DOI: 10.1073/pnas.0500327102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Primus inter pares (first among equals).

Authors:  J L Keck; J M Berger
Journal:  Nat Struct Biol       Date:  2001-01

2.  Simultaneous interactions of bacteriophage T4 DNA replication proteins gp59 and gp32 with single-stranded (ss) DNA. Co-modulation of ssDNA binding activities in a DNA helicase assembly intermediate.

Authors:  S D Lefebvre; M L Wong; S W Morrical
Journal:  J Biol Chem       Date:  1999-08-06       Impact factor: 5.157

Review 3.  Polymerases and the replisome: machines within machines.

Authors:  T A Baker; S P Bell
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

4.  Stoichiometry and DNA unwinding by the bacteriophage T4 41:59 helicase.

Authors:  K D Raney; T E Carver; S J Benkovic
Journal:  J Biol Chem       Date:  1996-06-14       Impact factor: 5.157

5.  Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC.

Authors:  C San Martin; M Radermacher; B Wolpensinger; A Engel; C S Miles; N E Dixon; J M Carazo
Journal:  Structure       Date:  1998-04-15       Impact factor: 5.006

6.  Interaction of the bacteriophage T4 gene 59 helicase loading protein and gene 41 helicase with each other and with fork, flap, and cruciform DNA.

Authors:  C E Jones; T C Mueser; N G Nossal
Journal:  J Biol Chem       Date:  2000-09-01       Impact factor: 5.157

7.  Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA.

Authors:  Y Shamoo; A M Friedman; M R Parsons; W H Konigsberg; T A Steitz
Journal:  Nature       Date:  1995-07-27       Impact factor: 49.962

8.  Bacteriophage T4 gene 59 helicase assembly protein binds replication fork DNA. The 1.45 A resolution crystal structure reveals a novel alpha-helical two-domain fold.

Authors:  T C Mueser; C E Jones; N G Nossal; C C Hyde
Journal:  J Mol Biol       Date:  2000-02-18       Impact factor: 5.469

9.  The hexameric E. coli DnaB helicase can exist in different Quaternary states.

Authors:  X Yu; M J Jezewska; W Bujalowski; E H Egelman
Journal:  J Mol Biol       Date:  1996-05-31       Impact factor: 5.469

10.  Bacteriophage T4 Dda helicase translocates in a unidirectional fashion on single-stranded DNA.

Authors:  K D Raney; S J Benkovic
Journal:  J Biol Chem       Date:  1995-09-22       Impact factor: 5.157

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  16 in total

1.  Single-molecule fluorescence spectroscopy in (bio)catalysis.

Authors:  Maarten B J Roeffaers; Gert De Cremer; Hiroshi Uji-i; Benîot Muls; Bert F Sels; Pierre A Jacobs; Frans C De Schryver; Dirk E De Vos; Johan Hofkens
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

2.  Templated mutagenesis in bacteriophage T4 involving imperfect direct or indirect sequence repeats.

Authors:  Gary E Schultz; John W Drake
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

3.  Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism.

Authors:  Timothée Lionnet; Michelle M Spiering; Stephen J Benkovic; David Bensimon; Vincent Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-05       Impact factor: 11.205

4.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

Review 5.  Replication-fork dynamics.

Authors:  Karl E Duderstadt; Rodrigo Reyes-Lamothe; Antoine M van Oijen; David J Sherratt
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

Review 6.  Single-molecule studies of DNA replisome function.

Authors:  Senthil K Perumal; Hongjun Yue; Zhenxin Hu; Michelle M Spiering; Stephen J Benkovic
Journal:  Biochim Biophys Acta       Date:  2009-08-07

7.  Investigation of stoichiometry of T4 bacteriophage helicase loader protein (gp59).

Authors:  Sri Ranjini Arumugam; Tae-Hee Lee; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2009-08-20       Impact factor: 5.157

8.  RNA primer handoff in bacteriophage T4 DNA replication: the role of single-stranded DNA-binding protein and polymerase accessory proteins.

Authors:  Scott W Nelson; Ravindra Kumar; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2008-05-28       Impact factor: 5.157

Review 9.  Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies.

Authors:  Andrew Robinson; Antoine M van Oijen
Journal:  Nat Rev Microbiol       Date:  2013-04-03       Impact factor: 60.633

10.  Coupling DNA unwinding activity with primer synthesis in the bacteriophage T4 primosome.

Authors:  Maria Manosas; Michelle M Spiering; Zhihao Zhuang; Stephen J Benkovic; Vincent Croquette
Journal:  Nat Chem Biol       Date:  2009-10-18       Impact factor: 15.040

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