Literature DB >> 8475061

Assembly of a functional replication complex without ATP hydrolysis: a direct interaction of bacteriophage T4 gp45 with T4 DNA polymerase.

M K Reddy1, S E Weitzel, P H von Hippel.   

Abstract

The seven-protein bacteriophage T4 DNA replication complex can be manipulated in vitro to study mechanistic aspects of the elongation phase of DNA replication. Under physiological conditions, the processivity of DNA synthesis catalyzed by the T4 polymerase (gp43) is greatly increased by the interaction of this enzyme with its accessory proteins (gp44/62 and gp45) and the T4 single-stranded DNA binding protein (gp32). The assembly of this T4 holoenzyme requires hydrolysis of ATP by the gp44/62 complex. We demonstrate here that processive T4 holoenzyme-like DNA synthesis can be obtained without hydrolysis of ATP by simply adding gp45 to the T4 DNA polymerase at extremely high concentrations, effectively bypassing the ATPase subunits (gp44/62) of the accessory protein complex. The amount of gp45 required for the gp43-gp45 heteroassociation event is reduced by addition of the macromolecular crowding agent polyethylene glycol (PEG) as well as gp32. A chromatographic strategy involving PEG has been used to demonstrate the gp43-gp45 interaction. These results suggest that gp45 is ultimately responsible for increasing the processivity of DNA synthesis via a direct and functionally significant interaction with the T4 DNA polymerase. A corollary to this notion is that the specific role of the gp44/62 complex is to catalytically link gp45 to gp43.

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Year:  1993        PMID: 8475061      PMCID: PMC46269          DOI: 10.1073/pnas.90.8.3211

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  Structure and function of the bacteriophage T4 DNA polymerase holoenzyme.

Authors:  M C Young; M K Reddy; P H von Hippel
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

2.  Oligonucleotide interactions. IV. Conformational differences between deoxy- and ribodinucleoside phosphates.

Authors:  M M Warshaw; C R Cantor
Journal:  Biopolymers       Date:  1970       Impact factor: 2.505

3.  Excess beta subunit can bypass the ATP requirement for highly processive synthesis by the Escherichia coli DNA polymerase III holoenzyme.

Authors:  J J Crute; R J LaDuca; K O Johanson; C S McHenry; R A Bambara
Journal:  J Biol Chem       Date:  1983-09-25       Impact factor: 5.157

4.  Affinity purification of bacteriophage T4 proteins essential for DNA replication and genetic recombination.

Authors:  T Formosa; R L Burke; B M Alberts
Journal:  Proc Natl Acad Sci U S A       Date:  1983-05       Impact factor: 11.205

5.  The 3'-5' proofreading exonuclease of bacteriophage T4 DNA polymerase is stimulated by other T4 DNA replication proteins.

Authors:  P Bedinger; B M Alberts
Journal:  J Biol Chem       Date:  1983-08-25       Impact factor: 5.157

6.  Bacteriophage T4 gene 44/62 and gene 45 polymerase accessory proteins stimulate hydrolysis of duplex DNA by T4 DNA polymerase.

Authors:  M Venkatesan; N G Nossal
Journal:  J Biol Chem       Date:  1982-10-25       Impact factor: 5.157

7.  The DNA enzymology of protein machines.

Authors:  B M Alberts
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1984

8.  Mechanism of DNA elongation catalyzed by Escherichia coli DNA polymerase III, dnaZ protein, and DNA elongation factors I and III.

Authors:  S Wickner
Journal:  Proc Natl Acad Sci U S A       Date:  1976-10       Impact factor: 11.205

9.  The beta subunit of the Escherichia coli DNA polymerase III holoenzyme interacts functionally with the catalytic core in the absence of other subunits.

Authors:  R J LaDuca; J J Crute; C S McHenry; R A Bambara
Journal:  J Biol Chem       Date:  1986-06-05       Impact factor: 5.157

10.  Products of bacteriophage T4 genes 32 and 45 improve the accuracy of DNA replication in vitro.

Authors:  M D Topal; N K Sinha
Journal:  J Biol Chem       Date:  1983-10-25       Impact factor: 5.157

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  23 in total

1.  Opening of a monomer-monomer interface of the trimeric bacteriophage T4-coded GP45 sliding clamp is required for clamp loading onto DNA.

Authors:  G J Latham; F Dong; P Pietroni; J M Dozono; D J Bacheller; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

2.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

3.  A direct interaction between a DNA-tracking protein and a promoter recognition protein: implications for searching DNA sequence.

Authors:  R L Tinker-Kulberg; T J Fu; E P Geiduschek; G A Kassavetis
Journal:  EMBO J       Date:  1996-09-16       Impact factor: 11.598

Review 4.  Replication clamps and clamp loaders.

Authors:  Mark Hedglin; Ravindra Kumar; Stephen J Benkovic
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

Review 5.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

Review 6.  Understanding DNA replication by the bacteriophage T4 replisome.

Authors:  Stephen J Benkovic; Michelle M Spiering
Journal:  J Biol Chem       Date:  2017-09-25       Impact factor: 5.157

7.  Dual targets of a transcriptional activator that tracks on DNA.

Authors:  G M Sanders; G A Kassavetis; E P Geiduschek
Journal:  EMBO J       Date:  1997-06-02       Impact factor: 11.598

Review 8.  Structural and functional similarities of prokaryotic and eukaryotic DNA polymerase sliding clamps.

Authors:  Z Kelman; M O'Donnell
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

9.  Efficiency and frequency of translational coupling between the bacteriophage T4 clamp loader genes.

Authors:  M Y Torgov; D M Janzen; M K Reddy
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

Review 10.  Transcription of the T4 late genes.

Authors:  E Peter Geiduschek; George A Kassavetis
Journal:  Virol J       Date:  2010-10-28       Impact factor: 4.099

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