Literature DB >> 8248159

An examination of the generation-time effect on molecular evolution.

T Ohta1.   

Abstract

By using DNA sequences of 17 mammalian genes, the generation-time effect is estimated separately for synonymous substitutions and nonsynonymous substitutions. Star phylogenies composed of rodentia, artiodactyla, and primates are examined. The generation-time effect is found to be more conspicuous for synonymous substitutions than for non-synonymous substitutions, by using the methods of (i) Nei and Gojobori, (ii) Li, and (iii) Ina. The proportion of accepted amino acid substitutions in evolution is estimated to be about twice as large in the primate lineage as in the rodent lineage. This result is in accord with the nearly neutral theory of molecular evolution.

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Year:  1993        PMID： 8248159      PMCID： PMC47840          DOI： 10.1073/pnas.90.22.10676

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  60 in total

1.  Deletion of 3' untranslated region of human BSF-2 mRNA causes stabilization of the mRNA and high-level expression in mouse NIH3T3 cells.

Authors:  N Tonouchi; K Miwa; H Karasuyama; H Matsui
Journal:  Biochem Biophys Res Commun       Date:  1989-09-15       Impact factor: 3.575

2.  Nucleotide sequence of human muscle acetylcholine receptor beta-subunit.

Authors:  D Beeson; M Brydson; J Newsom-Davis
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

3.  Nucleotide and deduced amino acid sequence of a gamma subunit of bovine fibrinogen.

Authors:  W M Brown; K M Dziegielewska; R C Foreman; N R Saunders
Journal:  Nucleic Acids Res       Date:  1989-08-11       Impact factor: 16.971

4.  Stimulation of B-cell progenitors by cloned murine interleukin-7.

Authors:  A E Namen; S Lupton; K Hjerrild; J Wignall; D Y Mochizuki; A Schmierer; B Mosley; C J March; D Urdal; S Gillis
Journal:  Nature       Date:  1988-06-09       Impact factor: 49.962

5.  Mouse serum growth hormone (GH) binding protein has GH receptor extracellular and substituted transmembrane domains.

Authors:  W C Smith; J Kuniyoshi; F Talamantes
Journal:  Mol Endocrinol       Date:  1989-06

6.  Molecular cloning and expression of rat interleukin-1 alpha cDNA.

Authors:  T Nishida; N Nishino; M Takano; Y Sekiguchi; K Kawai; K Mizuno; S Nakai; Y Masui; Y Hirai
Journal:  J Biochem       Date:  1989-03       Impact factor: 3.387

7.  Multiple biological activities are expressed by a mouse interleukin 6 cDNA clone isolated from bone marrow stromal cells.

Authors:  C P Chiu; C Moulds; R L Coffman; D Rennick; F Lee
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

8.  Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.

Authors:  P Pamilo; N O Bianchi
Journal:  Mol Biol Evol       Date:  1993-03       Impact factor: 16.240

9.  Human interleukin 7: molecular cloning and growth factor activity on human and murine B-lineage cells.

Authors:  R G Goodwin; S Lupton; A Schmierer; K J Hjerrild; R Jerzy; W Clevenger; S Gillis; D Cosman; A E Namen
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

10.  Isolation and characterization of a cDNA encoding the low molecular weight insulin-like growth factor binding protein (IBP-1).

Authors:  A Brinkman; C Groffen; D J Kortleve; A Geurts van Kessel; S L Drop
Journal:  EMBO J       Date:  1988-08       Impact factor: 11.598
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  54 in total

Review 1.  Molecular clocks and explosive radiations.

Authors:  Lindell Bromham
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

2.  Size of the protein-coding genome and rate of molecular evolution.

Authors:  Zoran A Rajic; Gradimir M Jankovic; Ana Vidovic; Natasa M Milic; Dejan Skoric; Milorad Pavlovic; Vladimir Lazarevic
Journal:  J Hum Genet       Date:  2005-05-10       Impact factor: 3.172

3.  There is no universal molecular clock for invertebrates, but rate variation does not scale with body size.

Authors:  Jessica A Thomas; John J Welch; Megan Woolfit; Lindell Bromham
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-01       Impact factor: 11.205

4.  Impact of mating systems on patterns of sequence polymorphism in flowering plants.

Authors:  Sylvain Glémin; Eric Bazin; Deborah Charlesworth
Journal:  Proc Biol Sci       Date:  2006-12-07       Impact factor: 5.349

5.  Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes.

Authors:  Sankar Subramanian
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

6.  Promiscuity and the rate of molecular evolution at primate immunity genes.

Authors:  Gabriela Wlasiuk; Michael W Nachman
Journal:  Evolution       Date:  2010-03-08       Impact factor: 3.694

7.  New methods for estimating the numbers of synonymous and nonsynonymous substitutions.

Authors:  Y Ina
Journal:  J Mol Evol       Date:  1995-02       Impact factor: 2.395

8.  Inference of mutation parameters and selective constraint in mammalian coding sequences by approximate Bayesian computation.

Authors:  Peter D Keightley; Lél Eöry; Daniel L Halligan; Mark Kirkpatrick
Journal:  Genetics       Date:  2011-02-01       Impact factor: 4.562

9.  Yeast Spontaneous Mutation Rate and Spectrum Vary with Environment.

Authors:  Haoxuan Liu; Jianzhi Zhang
Journal:  Curr Biol       Date:  2019-05-02       Impact factor: 10.834

10.  The Dynamics, Causes, and Impacts of Mammalian Evolutionary Rates Revealed by the Analyses of Capybara Draft Genome Sequences.

Authors:  Isaac Adeyemi Babarinde; Naruya Saitou
Journal:  Genome Biol Evol       Date:  2020-08-01       Impact factor: 3.416
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