Literature DB >> 8039509

The exchange of the discriminator base A73 for G is alone sufficient to convert human tRNA(Leu) into a serine-acceptor in vitro.

K Breitschopf1, H J Gross.   

Abstract

Transfer RNA (tRNA) identify is maintained by the highly specific interaction of a few defined nucleotides or groups of nucleotides, called identity elements, with the cognate aminoacyl-tRNA synthetase, and by nonproductive interactions with the other 19 aminoacyl-tRNA synthetases. Most tRNAs have a set of identity elements in at least two locations, commonly in the anticodon loop or in the acceptor stem, and at the discriminator base position 73. We have used T7 RNA polymerase transcribed tRNAs to demonstrate that the sole replacement of the discriminator base A73 of human tRNA(Leu) with the tRNA(Ser)-specific G generates a complete identity switch to serine acceptance. The reverse experiment, the exchange of G73 in human tRNA(Ser) for the tRNA(Leu-specific A, causes a total loss of serine specificity without creating any leucine acceptance. These results suggest that the discriminator base A73 of human tRNA(Leu) alone protects this tRNA against serylation by seryl-tRNA synthetase. This is the first report of a complete identity switch caused by an exchange of the discriminator base alone.

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Year:  1994        PMID: 8039509      PMCID: PMC395208          DOI: 10.1002/j.1460-2075.1994.tb06615.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  28 in total

Review 1.  Parameters for the molecular recognition of transfer RNAs.

Authors:  P Schimmel
Journal:  Biochemistry       Date:  1989-04-04       Impact factor: 3.162

Review 2.  The transfer RNA identity problem: a search for rules.

Authors:  M E Saks; J R Sampson; J N Abelson
Journal:  Science       Date:  1994-01-14       Impact factor: 47.728

3.  Discrimination between glutaminyl-tRNA synthetase and seryl-tRNA synthetase involves nucleotides in the acceptor helix of tRNA.

Authors:  M J Rogers; D Söll
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

4.  Gene for a novel tRNA species that accepts L-serine and cotranslationally inserts selenocysteine.

Authors:  W Leinfelder; E Zehelein; M A Mandrand-Berthelot; A Böck
Journal:  Nature       Date:  1988-02-25       Impact factor: 49.962

5.  Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro.

Authors:  J R Sampson; O C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

6.  Is there a discriminator site in transfer RNA?

Authors:  D M Crothers; T Seno; G Söll
Journal:  Proc Natl Acad Sci U S A       Date:  1972-10       Impact factor: 11.205

7.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

Authors:  J D Dignam; R M Lebovitz; R G Roeder
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

8.  Purification and properties of bovine liver seryl-tRNA synthetase.

Authors:  T Mizutani; T Narihara; A Hashimoto
Journal:  Eur J Biochem       Date:  1984-08-15

9.  Changing the acceptor identity of a transfer RNA by altering nucleotides in a "variable pocket".

Authors:  W H McClain; K Foss
Journal:  Science       Date:  1988-09-30       Impact factor: 47.728

10.  Amber, ochre and opal suppressor tRNA genes derived from a human serine tRNA gene.

Authors:  J P Capone; P A Sharp; U L RajBhandary
Journal:  EMBO J       Date:  1985-01       Impact factor: 11.598

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  21 in total

1.  pGp as the main product of bovine tRNA kinase.

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Journal:  Mol Biol Rep       Date:  2002-09       Impact factor: 2.316

Review 2.  Structure, function and evolution of seryl-tRNA synthetases: implications for the evolution of aminoacyl-tRNA synthetases and the genetic code.

Authors:  M Härtlein; S Cusack
Journal:  J Mol Evol       Date:  1995-05       Impact factor: 2.395

3.  RNA editing in the acceptor stem of squid mitochondrial tRNA(Tyr).

Authors:  K Tomita; T Ueda; K Watanabe
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

4.  Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp.

Authors:  Steven E Massey; Gabriela Moura; Pedro Beltrão; Ricardo Almeida; James R Garey; Mick F Tuite; Manuel A S Santos
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

Review 5.  Challenges of site-specific selenocysteine incorporation into proteins by Escherichia coli.

Authors:  Xian Fu; Dieter Söll; Anastasia Sevostyanova
Journal:  RNA Biol       Date:  2018-03-12       Impact factor: 4.652

6.  Structural studies on tRNA acceptor stem microhelices: exchange of the discriminator base A73 for G in human tRNALeu switches the acceptor specificity from leucine to serine possibly by decreasing the stability of the terminal G1-C72 base pair.

Authors:  A U Metzger; M Heckl; D Willbold; K Breitschopf; U L RajBhandary; P Rösch; H J Gross
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

7.  Identity elements of human tRNA(Leu): structural requirements for converting human tRNA(Ser) into a leucine acceptor in vitro.

Authors:  K Breitschopf; T Achsel; K Busch; H J Gross
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

8.  Molecular reconstruction of a fungal genetic code alteration.

Authors:  Denisa D Mateus; João A Paredes; Yaiza Español; Lluís Ribas de Pouplana; Gabriela R Moura; Manuel A S Santos
Journal:  RNA Biol       Date:  2013-04-17       Impact factor: 4.652

9.  NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3' end.

Authors:  E V Puglisi; J D Puglisi; J R Williamson; U L RajBhandary
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

10.  The dual identities of mammalian tRNA(Sec) for SerRS and selenocysteine synthase.

Authors:  T Mizutani; K Kanaya; S Ikeda; T Fujiwara; K Yamada; T Totsuka
Journal:  Mol Biol Rep       Date:  1998-11       Impact factor: 2.316

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