Literature DB >> 4562753

Is there a discriminator site in transfer RNA?

D M Crothers, T Seno, G Söll.   

Abstract

We determined the nature of the fourth nucleotide from the 3'-end of several Escherichia coli tRNAs, and tabulated these results with the same data for all known tRNA sequences. We find a striking constancy of the fourth nucleotide in tRNAs specific for a given amino acid. Furthermore, tRNAs specific for chemically related amino acids are very likely to have the same nucleotide at the fourth position. One possible explanation for these regularities is the "discriminator" hypothesis: The code by which tRNA is recognized by its cognate aminoacyl-tRNA synthetase is logically hierarchical, with the fourth nucleotide serving as a primary "discriminator" site to subdivide the tRNAs into groups for recognition purposes. Each such group could have its own recognition code, or could be further subdivided by a secondary discriminator site. According to this hypothesis, chemically similar amino acids have the same discriminator nucleotide because they evolved from a single set of related amino acids indistinguishable to a primitive system. There are other possible explanations for the observed regularities at the fourth nucleotide. For example, it is conceivable that the position is used for a direct physical interaction with the amino acid in the charging process, and chemically similar amino acids naturally select the same nucleotide. Further experiments can be expected to clarify this question.

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Year:  1972        PMID: 4562753      PMCID: PMC389707          DOI: 10.1073/pnas.69.10.3063

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  Unusual CCA-stem structure of E. coli B tRNAH(His)(1).

Authors:  F Harada; S Sato; S Nishimura
Journal:  FEBS Lett       Date:  1972-01-01       Impact factor: 4.124

2.  Nucleotide sequence of "renaturable" leucine transfer ribonucleic acid.

Authors:  S H. Chang; N R. Miller; C W. Harmon
Journal:  FEBS Lett       Date:  1971-10-01       Impact factor: 4.124

3.  The nucleotide sequence of two leucine tRNA species from Escherichia coli K12.

Authors:  H U Blank; D Söll
Journal:  Biochem Biophys Res Commun       Date:  1971-06-04       Impact factor: 3.575

4.  More mutant tyrosine transfer ribonucleic acids.

Authors:  J D Smith; L Barnett; S Brenner; R L Russell
Journal:  J Mol Biol       Date:  1970-11-28       Impact factor: 5.469

5.  Primary structure of a methionine transfer RNA from Escherichia coli.

Authors:  S Cory; K A Marcker; S K Dube; B F Clark
Journal:  Nature       Date:  1968-12-07       Impact factor: 49.962

6.  On the recognition of serine transfer RNA's specific for unrelated codons by the same seryl-transfer RNA synthetase.

Authors:  G Sundharadas; J R Katze; D Söll; W Konigsberg; P Lengyel
Journal:  Proc Natl Acad Sci U S A       Date:  1968-10       Impact factor: 11.205

7.  Structure of a mammalian serine tRNA.

Authors:  M Staehelin; H Rogg; B C Baguley; T Ginsberg; W Wehrli
Journal:  Nature       Date:  1968-09-28       Impact factor: 49.962

8.  Normal and mutant glycine transfer RNAs.

Authors:  C Squires; J Carbon
Journal:  Nat New Biol       Date:  1971-10-27

9.  The structure and coding specificity of a lysine transfer ribonucleic acid from the haploid yeast Saccharomyces cerevisiae alpha S288C.

Authors:  C J Smith; A N Ley; P D'Obrenan; S K Mitra
Journal:  J Biol Chem       Date:  1971-12-25       Impact factor: 5.157

10.  Nucleotide sequence of the "denaturable" leucine transfer RNA from yeast.

Authors:  S Kowalski; T Yamane; J R Fresco
Journal:  Science       Date:  1971-04-23       Impact factor: 47.728

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  86 in total

1.  The peculiar architectural framework of tRNASec is fully recognized by yeast AspRS.

Authors:  J Rudinger-Thirion; R Giegé
Journal:  RNA       Date:  1999-04       Impact factor: 4.942

2.  Study of the role of the acceptor stem in the interactions between tRNAs and aminoacyl-tRNA synthetases.

Authors:  J Bonnet; N Befort; C Bollack; F Fasiolo; J P Ebel
Journal:  Nucleic Acids Res       Date:  1975-02       Impact factor: 16.971

3.  The origin of the genetic code.

Authors:  M Ishigami; K Nagano
Journal:  Orig Life       Date:  1975-10

4.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

5.  The anticodon triplet is not sufficient to confer methionine acceptance to a transfer RNA.

Authors:  B Senger; L Despons; P Walter; F Fasiolo
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

Review 6.  The accuracy of aminoacylation--ensuring the fidelity of the genetic code.

Authors:  D Söll
Journal:  Experientia       Date:  1990-12-01

7.  Nucleotide sequences of two serine tRNAs with a GGA anticodon: the structure-function relationships in the serine family of E. coli tRNAs.

Authors:  H Grosjean; K Nicoghosian; E Haumont; D Söll; R Cedergren
Journal:  Nucleic Acids Res       Date:  1985-08-12       Impact factor: 16.971

8.  Identity elements of human tRNA(Leu): structural requirements for converting human tRNA(Ser) into a leucine acceptor in vitro.

Authors:  K Breitschopf; T Achsel; K Busch; H J Gross
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

9.  The 3'-terminal end (NCCA) of tRNA determines the structure and stability of the aminoacyl acceptor stem.

Authors:  S Limmer; H P Hofmann; G Ott; M Sprinzl
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

10.  Species-specific differences in the operational RNA code for aminoacylation of tRNA(Trp).

Authors:  F Xu; X Chen; L Xin; L Chen; Y Jin; D Wang
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

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