Literature DB >> 29447106

Challenges of site-specific selenocysteine incorporation into proteins by Escherichia coli.

Xian Fu1, Dieter Söll1,2, Anastasia Sevostyanova1.   

Abstract

Selenocysteine (Sec), a rare genetically encoded amino acid with unusual chemical properties, is of great interest for protein engineering. Sec is synthesized on its cognate tRNA (tRNASec) by the concerted action of several enzymes. While all other aminoacyl-tRNAs are delivered to the ribosome by the elongation factor Tu (EF-Tu), Sec-tRNASec requires a dedicated factor, SelB. Incorporation of Sec into protein requires recoding of the stop codon UGA aided by a specific mRNA structure, the SECIS element. This unusual biogenesis restricts the use of Sec in recombinant proteins, limiting our ability to study the properties of selenoproteins. Several methods are currently available for the synthesis selenoproteins. Here we focus on strategies for in vivo Sec insertion at any position(s) within a recombinant protein in a SECIS-independent manner: (i) engineering of tRNASec for use by EF-Tu without the SECIS requirement, and (ii) design of a SECIS-independent SelB route.

Entities:  

Keywords:  Protein engineering; genetic code expansion, tRNA, SelA, SelB; selenocysteine; selenoproteins

Mesh:

Substances:

Year:  2018        PMID: 29447106      PMCID: PMC6103685          DOI: 10.1080/15476286.2018.1440876

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  98 in total

1.  Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB.

Authors:  Nicolas Soler; Dominique Fourmy; Satoko Yoshizawa
Journal:  J Mol Biol       Date:  2007-05-10       Impact factor: 5.469

2.  Thermodynamic and kinetic framework of selenocysteyl-tRNASec recognition by elongation factor SelB.

Authors:  Alena Paleskava; Andrey L Konevega; Marina V Rodnina
Journal:  J Biol Chem       Date:  2009-11-23       Impact factor: 5.157

3.  The pathway to GTPase activation of elongation factor SelB on the ribosome.

Authors:  Niels Fischer; Piotr Neumann; Lars V Bock; Cristina Maracci; Zhe Wang; Alena Paleskava; Andrey L Konevega; Gunnar F Schröder; Helmut Grubmüller; Ralf Ficner; Marina V Rodnina; Holger Stark
Journal:  Nature       Date:  2016-11-14       Impact factor: 49.962

4.  Gene for a novel tRNA species that accepts L-serine and cotranslationally inserts selenocysteine.

Authors:  W Leinfelder; E Zehelein; M A Mandrand-Berthelot; A Böck
Journal:  Nature       Date:  1988-02-25       Impact factor: 49.962

5.  Domain structure of the prokaryotic selenocysteine-specific elongation factor SelB.

Authors:  M Kromayer; R Wilting; P Tormay; A Böck
Journal:  J Mol Biol       Date:  1996-10-04       Impact factor: 5.469

6.  Kinetics of the interaction of translation factor SelB from Escherichia coli with guanosine nucleotides and selenocysteine insertion sequence RNA.

Authors:  M Thanbichler; A Bock; R S Goody
Journal:  J Biol Chem       Date:  2000-07-07       Impact factor: 5.157

7.  Contributions of discrete tRNA(Ser) domains to aminoacylation by E.coli seryl-tRNA synthetase: a kinetic analysis using model RNA substrates.

Authors:  J R Sampson; M E Saks
Journal:  Nucleic Acids Res       Date:  1993-09-25       Impact factor: 16.971

8.  Substituting selenocysteine for active site cysteine 149 of phosphorylating glyceraldehyde 3-phosphate dehydrogenase reveals a peroxidase activity.

Authors:  S Boschi-Muller; S Muller; A Van Dorsselaer; A Böck; G Branlant
Journal:  FEBS Lett       Date:  1998-11-20       Impact factor: 4.124

9.  The long extra arms of human tRNA((Ser)Sec) and tRNA(Ser) function as major identify elements for serylation in an orientation-dependent, but not sequence-specific manner.

Authors:  X Q Wu; H J Gross
Journal:  Nucleic Acids Res       Date:  1993-12-11       Impact factor: 16.971

10.  Methionine sulfoxide reduction in mammals: characterization of methionine-R-sulfoxide reductases.

Authors:  Hwa-Young Kim; Vadim N Gladyshev
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

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  9 in total

1.  Transfer RNA function and evolution.

Authors:  Patrick O'Donoghue; Jiqiang Ling; Dieter Söll
Journal:  RNA Biol       Date:  2018       Impact factor: 4.652

2.  Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs.

Authors:  Xian Fu; Ana Crnković; Anastasia Sevostyanova; Dieter Söll
Journal:  FEBS Lett       Date:  2018-10-24       Impact factor: 4.124

3.  Generation of Recombinant Mammalian Selenoproteins through Genetic Code Expansion with Photocaged Selenocysteine.

Authors:  Jennifer C Peeler; Julia A Falco; Rachel E Kelemen; Masahiro Abo; Benjamin V Chartier; Laura C Edinger; Jingjia Chen; Abhishek Chatterjee; Eranthie Weerapana
Journal:  ACS Chem Biol       Date:  2020-05-05       Impact factor: 5.100

Review 4.  Chemical Biology Approaches to Interrogate the Selenoproteome.

Authors:  Jennifer C Peeler; Eranthie Weerapana
Journal:  Acc Chem Res       Date:  2019-09-16       Impact factor: 22.384

5.  Can Selenoenzymes Resist Electrophilic Modification? Evidence from Thioredoxin Reductase and a Mutant Containing α-Methylselenocysteine.

Authors:  Emma J Ste Marie; Robert J Wehrle; Daniel J Haupt; Neil B Wood; Albert van der Vliet; Michael J Previs; Douglas S Masterson; Robert J Hondal
Journal:  Biochemistry       Date:  2020-08-30       Impact factor: 3.162

6.  Expression of selenoproteins via genetic code expansion in mammalian cells.

Authors:  Jennifer C Peeler; Eranthie Weerapana
Journal:  Methods Enzymol       Date:  2021-11-24       Impact factor: 1.682

Review 7.  Engineering Translation Components Improve Incorporation of Exotic Amino Acids.

Authors:  Takayuki Katoh; Hiroaki Suga
Journal:  Int J Mol Sci       Date:  2019-01-26       Impact factor: 5.923

Review 8.  Selenium Metabolism and Selenoproteins in Prokaryotes: A Bioinformatics Perspective.

Authors:  Yan Zhang; Jiao Jin; Biyan Huang; Huimin Ying; Jie He; Liang Jiang
Journal:  Biomolecules       Date:  2022-06-29

9.  Selenoprotein: Potential Player in Redox Regulation in Chlamydomonas reinhardtii.

Authors:  Sandip A Ghuge; Ulhas Sopanrao Kadam; Jong Chan Hong
Journal:  Antioxidants (Basel)       Date:  2022-08-22
  9 in total

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