Literature DB >> 8031291

(CAC)5 detects DNA fingerprints and sequences homologous to gene transcripts in rice.

V S Gupta1, W Ramakrishna, S R Rawat, P K Ranjekar.   

Abstract

In the present report the potential of (CAC)5 is demonstrated for DNA fingerprinting in rice. Based on the fingerprint data, (CAC)5 was estimated to differentiate up to 6.3 x 10(8) genotypes of rice. In a search for homologous sequences in rice transcripts, four oligonucleotide probes, namely, (CAC)5, (GATA)4, (GACA)4, and (TG)10, were used. Among these probes, (CAC)5 showed hybridization to total rice RNA in a tissue-specific manner; while a band at 1.2 kb was common in both seed and leaf RNA, there were additional prominent bands at 1.9 and 2.3 kb in seed and leaf RNA, respectively. When (CAC)5 was hybridized to poly(A)+ RNA, in addition to a band at 1.2 kb in seed and leaf, hybridization was observed only in seed to heterogeneously sized RNAs.

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Year:  1994        PMID: 8031291     DOI: 10.1007/bf00557234

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   1.890


  23 in total

1.  Fingerprinting plant genomes with oligonucleotide probes specific for simple repetitive DNA sequences.

Authors:  B Beyermann; P Nürnberg; A Weihe; M Meixner; J T Epplen; T Börner
Journal:  Theor Appl Genet       Date:  1992-04       Impact factor: 5.699

2.  DNA fingerprints applied to gene introgression in breeding programs.

Authors:  J Hillel; T Schaap; A Haberfeld; A J Jeffreys; Y Plotzky; A Cahaner; U Lavi
Journal:  Genetics       Date:  1990-03       Impact factor: 4.562

3.  A procedure for the small-scale isolation of plant RNA suitable for RNA blot analysis.

Authors:  G J Wadsworth; M G Redinbaugh; J G Scandalios
Journal:  Anal Biochem       Date:  1988-07       Impact factor: 3.365

4.  Optimized oligonucleotide probes for DNA fingerprinting.

Authors:  R Schäfer; H Zischler; U Birsner; A Becker; J T Epplen
Journal:  Electrophoresis       Date:  1988-08       Impact factor: 3.535

5.  Hypervariable 'minisatellite' regions in human DNA.

Authors:  A J Jeffreys; V Wilson; S L Thein
Journal:  Nature       Date:  1985 Mar 7-13       Impact factor: 49.962

6.  The conserved nucleotide sequences of Bkm, which define Sxr in the mouse, are transcribed.

Authors:  L Singh; C Phillips; K W Jones
Journal:  Cell       Date:  1984-01       Impact factor: 41.582

7.  Evolution and distribution of (GT)n repetitive sequences in mammalian genomes.

Authors:  R L Stallings; A F Ford; D Nelson; D C Torney; C E Hildebrand; R K Moyzis
Journal:  Genomics       Date:  1991-07       Impact factor: 5.736

8.  Dissecting (CAC)5/(GTG)5 multilocus fingerprints from man into individual locus-specific, hypervariable components.

Authors:  H Zischler; C Kammerbauer; R Studer; K H Grzeschik; J T Epplen
Journal:  Genomics       Date:  1992-08       Impact factor: 5.736

9.  The expression of the evolutionarily conserved GATA/GACA repeats in mouse tissues.

Authors:  R Schäfer; E Böltz; A Becker; F Bartels; J T Epplen
Journal:  Chromosoma       Date:  1986       Impact factor: 4.316

Review 10.  Oligonucleotide fingerprinting using simple repeat motifs: a convenient, ubiquitously applicable method to detect hypervariability for multiple purposes.

Authors:  J T Epplen; H Ammer; C Epplen; C Kammerbauer; R Mitreiter; L Roewer; W Schwaiger; V Steimle; H Zischler; E Albert
Journal:  EXS       Date:  1991
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  4 in total

1.  DNA fingerprinting to detect genetic variation in rice using hypervariable DNA sequences.

Authors:  W Ramakrishna; K V Chowdari; M D Lagu; V S Gupta; P K Ranjekar
Journal:  Theor Appl Genet       Date:  1995-06       Impact factor: 5.699

2.  DNA fingerprinting detects genetic variability in the pearl millet downy mildew pathogen (Sclerospora graminicola).

Authors:  J G Sastry; W Ramakrishna; S Sivaramakrishnan; R P Thakur; V S Gupta; P K Ranjekar
Journal:  Theor Appl Genet       Date:  1995-11       Impact factor: 5.699

3.  Potential of (GATA)n microsatellites from rice for inter- and intra-specific variability studies.

Authors:  A P Davierwala; W Ramakrishna; V Chowdari; P K Ranjekar; V S Gupta
Journal:  BMC Evol Biol       Date:  2001-10-16       Impact factor: 3.260

4.  Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.

Authors:  Marianna Erbano; Guilherme Schnell E Schühli; Élide Pereira Dos Santos
Journal:  Int J Mol Sci       Date:  2015-04-08       Impact factor: 5.923

  4 in total

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