Literature DB >> 19770501

A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution.

Wakari Iwai1, Taro Yamada, Kazuo Kurihara, Yuki Ohnishi, Yoichiro Kobayashi, Ichiro Tanaka, Haruyuki Takahashi, Ryota Kuroki, Taro Tamada, Nobuo Niimura.   

Abstract

Neutron diffraction data for T(6) porcine insulin were collected to 2.1 A resolution from a single crystal partly deuterated by exchange of mother liquor. A maximum-likelihood structure refinement was undertaken using the neutron data and the structure was refined to a residual of 0.179. The hydrogen-bonding network of the central core of the hexamer was observed and the charge balance between positively charged Zn ions and their surrounding structure was interpreted by considering the protonation and/or deprotonation states and interactions of HisB10, water and GluB13. The observed double conformation of GluB13 was essential to interpreting the charge balance and could be compared with the structure of a dried crystal of T(6) human insulin at 100 K. Differences in the dynamic behaviour of the water molecules coordinating the upper and lower Zn ions were observed and interpreted. The hydrogen bonds in the insulin molecules, as well as those involving HisB10 and GluB13, are discussed. The hydrogen/deuterium (H/D) exchange ratios of the amide H atoms of T(6) porcine insulin in crystals were obtained and showed that regions highly protected from H/D exchange are concentrated in the centre of a helical region of the B chains. From the viewpoint of soaking time versus H/D-exchange ratios, the amide H atoms can be classified into three categories.

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Year:  2009        PMID: 19770501      PMCID: PMC2756163          DOI: 10.1107/S090744490902770X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  23 in total

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Authors:  D E McRee
Journal:  J Struct Biol       Date:  1999 Apr-May       Impact factor: 2.867

2.  The structure of T6 human insulin at 1.0 A resolution.

Authors:  G David Smith; Walter A Pangborn; Robert H Blessing
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-02-21

3.  Crystallographic titration of cubic insulin crystals: pH affects GluB13 switching and sulfate binding.

Authors:  Jiasheng Diao
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-03-25

4.  Lessons from an aged, dried crystal of T(6) human insulin.

Authors:  G David Smith; Robert H Blessing
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-07-23

5.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

Review 6.  Recent results on hydrogen and hydration in biology studied by neutron macromolecular crystallography.

Authors:  N Niimura; S Arai; K Kurihara; T Chatake; I Tanaka; R Bau
Journal:  Cell Mol Life Sci       Date:  2006-02       Impact factor: 9.261

7.  Free R value: a novel statistical quantity for assessing the accuracy of crystal structures.

Authors:  A T Brünger
Journal:  Nature       Date:  1992-01-30       Impact factor: 49.962

8.  Hydration in proteins observed by high-resolution neutron crystallography.

Authors:  Toshiyuki Chatake; Andreas Ostermann; Kazuo Kurihara; Fritz G Parak; Nobuo Niimura
Journal:  Proteins       Date:  2003-02-15

9.  Crystallization of a large single crystal of cubic insulin for neutron protein crystallography.

Authors:  M Maeda; T Chatake; I Tanaka; A Ostermann; N Niimura
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

10.  A new neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-4).

Authors:  Kazuo Kurihara; Ichiro Tanaka; Nobuo Niimura; Muhammad Refai Muslih; Andreas Ostermann
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

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  2 in total

1.  Long-term glycemic control and prevention of diabetes complications in vivo using oleic acid-grafted-chitosan‑zinc-insulin complexes incorporated in thermosensitive copolymer.

Authors:  Divya Sharma; Jagdish Singh
Journal:  J Control Release       Date:  2020-04-10       Impact factor: 9.776

2.  Nanomedical Relevance of the Intermolecular Interaction Dynamics-Examples from Lysozymes and Insulins.

Authors:  Ruiyan Zhang; Ning Zhang; Marzieh Mohri; Lisha Wu; Thomas Eckert; Vadim B Krylov; Andrea Antosova; Slavomira Ponikova; Zuzana Bednarikova; Philipp Markart; Andreas Günther; Bengt Norden; Martin Billeter; Roland Schauer; Axel J Scheidig; Bhisma N Ratha; Anirban Bhunia; Karsten Hesse; Mushira Abdelaziz Enani; Jürgen Steinmeyer; Athanasios K Petridis; Tibor Kozar; Zuzana Gazova; Nikolay E Nifantiev; Hans-Christian Siebert
Journal:  ACS Omega       Date:  2019-02-27
  2 in total

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