Literature DB >> 7899090

An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes.

M J Behe1.   

Abstract

A search of sequence information in the GenBank files shows that tracts of 15-30 contiguous purines are greatly overrepresented in all eukaryotic species examined, ranging from yeast to human. Such an overabundance does not occur in prokaryotic sequences. The large increase in the number of oligopurine tracts cannot be explained as a simple consequence of base composition, nearest-neighbor frequencies, or the occurrence of an overabundance of oligoadenosine tracts. Oligopurine sequences have previously been shown to be versatile structural elements in DNA, capable of occuring in several alternate conformations. Thus the bias toward long oligopurine tracts in eukaryotic DNA may reflect the usefulness of these structurally versatile sequences in cell function.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 7899090      PMCID: PMC306739          DOI: 10.1093/nar/23.4.689

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  DNA H form requires a homopurine-homopyrimidine mirror repeat.

Authors:  S M Mirkin; V I Lyamichev; K N Drushlyak; V N Dobrynin; S A Filippov; M D Frank-Kamenetskii
Journal:  Nature       Date:  1987 Dec 3-9       Impact factor: 49.962

2.  Nucleosome reconstitution of core-length poly(dG).poly(dC) and poly(rG-dC).poly(rG-dC).

Authors:  S D Jayasena; M J Behe
Journal:  Biochemistry       Date:  1989-02-07       Impact factor: 3.162

3.  The DNA sequence of the human beta-globin region is strongly biased in favor of long strings of contiguous purine or pyrimidine residues.

Authors:  M J Behe
Journal:  Biochemistry       Date:  1987-12-01       Impact factor: 3.162

4.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

5.  Sequence dependence of the helical repeat of DNA in solution.

Authors:  L J Peck; J C Wang
Journal:  Nature       Date:  1981-07-23       Impact factor: 49.962

Review 6.  The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences.

Authors:  R D Wells; D A Collier; J C Hanvey; M Shimizu; F Wohlrab
Journal:  FASEB J       Date:  1988-11       Impact factor: 5.191

7.  CD studies of double-stranded polydeoxynucleotides composed of repeating units of contiguous homopurine residues.

Authors:  S R Gudibande; S D Jayasena; M J Behe
Journal:  Biopolymers       Date:  1988-12       Impact factor: 2.505

8.  Competitive nucleosome reconstitution of polydeoxynucleotides containing oligoguanosine tracts.

Authors:  S D Jayasena; M J Behe
Journal:  J Mol Biol       Date:  1989-07-20       Impact factor: 5.469

9.  Nucleotide sequence analysis of the delta beta-globin gene region in humans.

Authors:  M Poncz; E Schwartz; M Ballantine; S Surrey
Journal:  J Biol Chem       Date:  1983-10-10       Impact factor: 5.157

10.  The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC).

Authors:  M McCall; T Brown; O Kennard
Journal:  J Mol Biol       Date:  1985-06-05       Impact factor: 5.469

View more
  31 in total

1.  Divalent counterion-induced condensation of triple-strand DNA.

Authors:  Xiangyun Qiu; V Adrian Parsegian; Donald C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

2.  The polypyrimidine/polypurine motif in the mouse mu opioid receptor gene promoter is a supercoiling-regulatory element.

Authors:  Chung-youl Choe; Hogyoung Kim; Jinping Dong; Andre J van Wijnen; Ping-Yee Law; Horace H Loh
Journal:  Gene       Date:  2011-07-31       Impact factor: 3.688

Review 3.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

Review 4.  G-quadruplexes-novel mediators of gene function.

Authors:  Wenhua Zhou; Nigel J Brand; Liming Ying
Journal:  J Cardiovasc Transl Res       Date:  2011-02-08       Impact factor: 4.132

5.  A new approach to overcome potassium-mediated inhibition of triplex formation.

Authors:  F Svinarchuk; D Cherny; A Debin; E Delain; C Malvy
Journal:  Nucleic Acids Res       Date:  1996-10-01       Impact factor: 16.971

6.  Cholesterol conjugated oligonucleotide and LNA: a comparison of cellular and nuclear uptake by Hep2 cells enhanced by streptolysin-O.

Authors:  Sárka Holasová; Martin Mojzísek; Martin Buncek; Doris Vokurková; Hana Radilová; Martina Safárová; Miroslav Cervinka; Radovan Haluza
Journal:  Mol Cell Biochem       Date:  2005-08       Impact factor: 3.396

7.  The high stability of the triple helices formed between short purine oligonucleotides and SIV/HIV-2 vpx genes is determined by the targeted DNA structure.

Authors:  F Svinarchuk; M Monnot; A Merle; C Malvy; S Fermandjian
Journal:  Nucleic Acids Res       Date:  1995-10-11       Impact factor: 16.971

8.  Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes.

Authors:  Alberto Marin-Gonzalez; Cesar L Pastrana; Rebeca Bocanegra; Alejandro Martín-González; J G Vilhena; Rubén Pérez; Borja Ibarra; Clara Aicart-Ramos; Fernando Moreno-Herrero
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

9.  Substitution-Inert Polynuclear Platinum Complexes That Inhibit the Activity of DNA Polymerase in Triplex-Forming Templates.

Authors:  Jaroslav Malina; Nicholas P Farrell; Viktor Brabec
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-07       Impact factor: 15.336

Review 10.  DNA triple helices: biological consequences and therapeutic potential.

Authors:  Aklank Jain; Guliang Wang; Karen M Vasquez
Journal:  Biochimie       Date:  2008-02-21       Impact factor: 4.079

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.