Literature DB >> 3053307

The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences.

R D Wells1, D A Collier, J C Hanvey, M Shimizu, F Wohlrab.   

Abstract

A family of unusual DNA structures has been discovered in segments with predominantly purines in one strand (pur.pyr sequences). These sequences are overrepresented in eukaryotic DNA and have been mapped near genes and recombination hot spots. When cloned into recombinant plasmids, many pur.pyr sequences are reactive to chemical and enzymic probes that are generally specific for single-stranded DNA. An intramolecular triplex is adopted by mirror repeats of G's and A's. Other non-B DNA structures adopted by similar sequences remain to be fully clarified but may be a family of related conformations. It is likely that these unorthodox structures play an important role in the function of the eukaryotic genome.

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Year:  1988        PMID: 3053307

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  133 in total

1.  Proton NMR studies of 5'-d-(TC)(3) (CT)(3) (AG)(3)-3'--a paperclip triplex: the structural relevance of turns.

Authors:  Laura B Pasternack; Shwu-Bin Lin; Tsung-Mei Chin; Wei-Chen Lin; Dee-Hua Huang; Lou-Sing Kan
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

2.  Drug binding to higher ordered DNA structures: netropsin complexation with a nucleic acid triple helix.

Authors:  Y W Park; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-15       Impact factor: 11.205

3.  The use of purine-rich oligonucleotides in triplex-mediated DNA isolation and generation of unidirectional deletions.

Authors:  T Takabatake; K Asada; Y Uchimura; M Ohdate; N Kusukawa
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

4.  Identifying Distal cis-acting Gene-Regulatory Sequences by Expressing BACs Functionalized with loxP-Tn10 Transposons in Zebrafish.

Authors:  Pradeep K Chatterjee; Leighcraft A Shakes; Hope M Wolf; Mohammad A Mujalled; Constance Zhou; Charles Hatcher; Derek C Norford
Journal:  RSC Adv       Date:  2013-06-21       Impact factor: 3.361

5.  Naturally extended CT . AG repeats increase H-DNA structures and promoter activity in the smooth muscle myosin light chain kinase gene.

Authors:  Yoo-Jeong Han; Primal de Lanerolle
Journal:  Mol Cell Biol       Date:  2007-11-08       Impact factor: 4.272

6.  Nucleotide sequence and genomic organization of bird minisatellites.

Authors:  U B Gyllensten; S Jakobsson; H Temrin; A C Wilson
Journal:  Nucleic Acids Res       Date:  1989-03-25       Impact factor: 16.971

7.  Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.

Authors:  Pooja Rawal; Veera Bhadra Rao Kummarasetti; Jinoy Ravindran; Nirmal Kumar; Kangkan Halder; Rakesh Sharma; Mitali Mukerji; Swapan Kumar Das; Shantanu Chowdhury
Journal:  Genome Res       Date:  2006-05       Impact factor: 9.043

8.  A human NDP-kinase B specifically binds single-stranded poly-pyrimidine sequences.

Authors:  M Hildebrandt; M L Lacombe; S Mesnildrey; M Véron
Journal:  Nucleic Acids Res       Date:  1995-10-11       Impact factor: 16.971

9.  NMR characterisation of a triple stranded complex formed by homo-purine and homo-pyrimidine DNA strands at 1:1 molar ratio and acidic pH.

Authors:  S R Bhaumik; K V Chary; G Govil; K Liu; H T Miles
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

10.  Hairpins in a DNA site for topoisomerase II studied by 1H- and 31P-NMR.

Authors:  A Amir-Aslani; O Mauffret; P Bittoun; F Sourgen; M Monnot; E Lescot; S Fermandjian
Journal:  Nucleic Acids Res       Date:  1995-10-11       Impact factor: 16.971

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